Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VMR32_RS10060 Genome accession   NZ_CP142601
Coordinates   2153668..2154303 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Tongji     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2148668..2159303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VMR32_RS10045 (VMR32_10045) - 2149374..2150618 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  VMR32_RS10050 (VMR32_10050) - 2150706..2151239 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  VMR32_RS10055 (VMR32_10055) comA 2151370..2153595 (+) 2226 WP_023132614.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VMR32_RS10060 (VMR32_10060) exbB 2153668..2154303 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VMR32_RS10065 (VMR32_10065) - 2154300..2154740 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  VMR32_RS10070 (VMR32_10070) lpxK 2154740..2155738 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  VMR32_RS10075 (VMR32_10075) - 2155776..2155961 (+) 186 WP_003091157.1 Trm112 family protein -
  VMR32_RS10080 (VMR32_10080) kdsB 2155961..2156725 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VMR32_RS10085 (VMR32_10085) - 2156725..2157189 (+) 465 WP_327213035.1 low molecular weight protein-tyrosine-phosphatase -
  VMR32_RS10090 (VMR32_10090) murB 2157186..2158205 (+) 1020 WP_033973683.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=926179 VMR32_RS10060 WP_003091163.1 2153668..2154303(+) (exbB) [Pseudomonas aeruginosa strain Tongji]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=926179 VMR32_RS10060 WP_003091163.1 2153668..2154303(+) (exbB) [Pseudomonas aeruginosa strain Tongji]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81