Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OX462_RS25815 Genome accession   NZ_CP142524
Coordinates   5736466..5737944 (-) Length   492 a.a.
NCBI ID   WP_070221651.1    Uniprot ID   A0A853SV47
Organism   Janthinobacterium sp. SUN098     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5731466..5742944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX462_RS25790 (OX462_25790) - 5732335..5732817 (+) 483 WP_034753339.1 PTS sugar transporter subunit IIA -
  OX462_RS25795 (OX462_25795) hprK 5732854..5733789 (+) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  OX462_RS25800 (OX462_25800) rapZ 5733956..5734819 (+) 864 WP_070221648.1 RNase adapter RapZ -
  OX462_RS25805 (OX462_25805) - 5734820..5735905 (-) 1086 WP_409027362.1 enoyl-CoA hydratase/isomerase family protein -
  OX462_RS25810 (OX462_25810) hpf 5736037..5736396 (-) 360 WP_070221650.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OX462_RS25815 (OX462_25815) rpoN/rpoN1 5736466..5737944 (-) 1479 WP_070221651.1 RNA polymerase factor sigma-54 Machinery gene
  OX462_RS25820 (OX462_25820) lptB 5737949..5738704 (-) 756 WP_034753325.1 LPS export ABC transporter ATP-binding protein -
  OX462_RS25825 (OX462_25825) lptA 5738704..5739285 (-) 582 WP_070221652.1 lipopolysaccharide transport periplasmic protein LptA -
  OX462_RS25830 (OX462_25830) lptC 5739311..5739922 (-) 612 WP_070221653.1 LPS export ABC transporter periplasmic protein LptC -
  OX462_RS25835 (OX462_25835) - 5739965..5740498 (-) 534 WP_070221654.1 HAD family hydrolase -
  OX462_RS25840 (OX462_25840) - 5740498..5741532 (-) 1035 WP_070312623.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54537.23 Da        Isoelectric Point: 5.1075

>NTDB_id=926053 OX462_RS25815 WP_070221651.1 5736466..5737944(-) (rpoN/rpoN1) [Janthinobacterium sp. SUN098]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
GQEAPAAPAEAETFDGEAGEGPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHIAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDDEDLREAQTVIRQCNPHPGAVFAADVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=926053 OX462_RS25815 WP_070221651.1 5736466..5737944(-) (rpoN/rpoN1) [Janthinobacterium sp. SUN098]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACTCTGGAATTGCACCAGGAACTCGAGCAACTGCTGACGGACAATCCCTTGCTCGAGCGCCTCGACGATCCGC
TCGACCGTTCGCTGCGCCTGCTGTCCGACGGGGCCTTGAGCTCCACGGCCGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGAGGCGCCCGCGGCGCCGGCCGAAGCGGAAACCTTTGACGGCGAGGCGGGCGAGGGCCCGGCCGCCGCGGATGG
CGGCGACAGCGACTGGAGCGAAGCGAGTCGGGGCAAGGCGCCCGACGACGAAGATTCCCGCCCGCAACTGGAGGCCCATC
ACTGTACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTCGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGATGCCGACGAGATGCGCACGGCCTTGTCGCTGCTGCAAAGTTTCGATCCGCCCGGCGTGGGCGCGCGCAATGCGT
CCGAATGCCTGGCGCTGCAAATCAAGCGCTTGCCGCACATCGCCATGGTGACGCGGCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGATGAAGACTTGCGTGA
AGCGCAGACGGTAATTCGCCAGTGCAACCCGCATCCGGGCGCCGTGTTCGCTGCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTGACCCTGAACAACGACGTCATGCCGCGCCTGCGCGTCAATGCC
ATGTACGCCAACTTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGTGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTCGACACGATTCTGCGCGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCA
TTAAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SV47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.714

100

0.622