Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OX462_RS11740 Genome accession   NZ_CP142524
Coordinates   2607691..2610126 (+) Length   811 a.a.
NCBI ID   WP_409028468.1    Uniprot ID   -
Organism   Janthinobacterium sp. SUN098     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2602691..2615126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX462_RS11715 (OX462_11720) - 2603893..2604366 (+) 474 WP_070220009.1 T6SS effector amidase Tae4 family protein -
  OX462_RS11720 (OX462_11725) - 2604370..2606355 (-) 1986 WP_409028466.1 helicase-related protein -
  OX462_RS11725 (OX462_11730) - 2606802..2607014 (+) 213 WP_409028467.1 hypothetical protein -
  OX462_RS11730 (OX462_11735) - 2607121..2607303 (+) 183 WP_141749921.1 hypothetical protein -
  OX462_RS11735 (OX462_11740) - 2607386..2607562 (-) 177 WP_175445239.1 hypothetical protein -
  OX462_RS11740 (OX462_11745) comA 2607691..2610126 (+) 2436 WP_409028468.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OX462_RS11745 (OX462_11750) - 2610166..2610930 (+) 765 WP_121669792.1 hypothetical protein -
  OX462_RS11750 (OX462_11755) - 2610990..2611511 (+) 522 WP_409028469.1 GNAT family N-acetyltransferase -
  OX462_RS11755 (OX462_11760) - 2611515..2612438 (-) 924 WP_409028470.1 LysR substrate-binding domain-containing protein -
  OX462_RS11760 (OX462_11765) - 2612590..2613351 (+) 762 WP_034756294.1 TSUP family transporter -
  OX462_RS11765 (OX462_11770) - 2613373..2614080 (+) 708 WP_409028471.1 HAD family hydrolase -
  OX462_RS11770 (OX462_11775) - 2614139..2614939 (+) 801 WP_230506714.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 811 a.a.        Molecular weight: 87802.26 Da        Isoelectric Point: 10.0165

>NTDB_id=926044 OX462_RS11740 WP_409028468.1 2607691..2610126(+) (comA) [Janthinobacterium sp. SUN098]
MRTLILGFAAGAAWLQTQASLPPHAGALLSVIAGAALLMAWLLCRHARWRSGWRSAIALSAGVGLGFYWAAWLAQAAMAP
QLALADEGQDIVVTGTVASLPYRFEQGVRFNFAVEKALNAKVPPLIALSWYAGFRDEVTNEVGDVQPGERWRLTVRLQRP
HGNANPMGFDYEAWLLEQGVRATGYVRPQPRADTPNMRLAAFVPGFGNVVEASRAVLRVRILRSLEGKQYAGVIVALVVG
DQRAIPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGALWRRSFFTERQLPLLLPAQKVAALAGALAALVYVLLAG
FGVPAQRTLYMLLVVALALWLGRITSIVHILCLALGVVVLLDPWAVLWPGFWLSFGAVATMLYATAGRTTAPLPENASRW
RRLRAAVALGAHTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLVVTPLSLAGSLLPAPLCDGLLLLAHAIVQML
AQVLDWLGARRFAVWTAPAPPWWSFCWALFGTAWLLAPRGWPQRWAGMLGWLPLLTALPSSPQPGQMWITAFDVGQGMAV
LVETHDHRLLYDTGPAYSLDSDGASRVIVPYLRARGISKLDGVIISHSDLDHAGGAISLLENVQVGWLASSLFDGHPAVE
ARRQARRPYLHCVAGQNWIWEGVRFAMLHPLPASHTDISLKPNARSCTVKITAGKHAILLAGDIEAAQEAQLLARSADGD
LAADVLLAPHHGSGTSSTPAFLNAVHPALAIFQVGHRNRYKHPKPQVYARYGDMGIARLRTDVTGAVVLEFGDDIDATLY
RASRPRYWHGR

Nucleotide


Download         Length: 2436 bp        

>NTDB_id=926044 OX462_RS11740 WP_409028468.1 2607691..2610126(+) (comA) [Janthinobacterium sp. SUN098]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCCGCCTGGTTGCAGACGCAGGCAAGCTTGCCGCCGCACGCGGGCGC
GCTGCTGTCGGTGATCGCTGGCGCGGCGCTGCTGATGGCGTGGCTGTTGTGCCGACACGCGCGCTGGCGTTCCGGTTGGC
GTTCCGCTATTGCGCTCTCGGCCGGCGTGGGGCTGGGCTTTTATTGGGCCGCCTGGCTGGCCCAGGCCGCCATGGCGCCG
CAACTGGCGCTGGCCGACGAGGGACAGGACATCGTCGTGACGGGCACGGTGGCCAGCTTGCCGTACCGCTTCGAGCAGGG
CGTGCGCTTCAATTTTGCCGTGGAGAAGGCACTCAATGCGAAGGTGCCTCCCCTGATCGCCCTGTCCTGGTACGCGGGCT
TTCGCGATGAGGTGACGAACGAGGTGGGCGACGTGCAGCCGGGCGAGCGCTGGCGGCTGACGGTGCGCCTGCAGCGCCCG
CACGGCAACGCGAATCCCATGGGTTTCGATTACGAGGCGTGGCTGCTGGAGCAGGGCGTGCGCGCCACCGGCTATGTGCG
GCCGCAGCCGCGCGCCGACACGCCCAACATGCGCCTGGCGGCCTTCGTGCCCGGTTTCGGCAATGTGGTGGAAGCGAGCC
GCGCAGTGTTGCGTGTGCGCATACTGCGCAGCCTGGAAGGCAAGCAGTATGCTGGCGTGATCGTGGCGCTGGTGGTGGGC
GACCAGCGCGCCATTCCCCAGTCGGACTGGCAAGTATTCAACCGCACGGGTGTGAGTCATCTGATCTCGATTTCCGGCCT
GCACATCACCATGATCGCGGGCCTCTTCGCCCTGGGGGCGGGCGCGCTGTGGCGGCGCTCGTTTTTCACGGAGCGGCAAT
TGCCTTTGCTGCTGCCGGCGCAAAAAGTGGCGGCGCTGGCCGGCGCGCTGGCGGCATTGGTGTATGTGCTGCTGGCCGGC
TTCGGCGTGCCCGCGCAACGCACTTTGTATATGTTGCTGGTGGTGGCGTTGGCTTTGTGGCTGGGACGCATCACCAGCAT
CGTCCATATCCTGTGCCTGGCGCTGGGCGTGGTCGTGCTGCTCGATCCCTGGGCCGTGCTGTGGCCCGGTTTCTGGCTGT
CGTTCGGCGCCGTTGCCACCATGCTGTACGCGACGGCAGGCCGCACCACGGCGCCTTTGCCGGAGAACGCCAGCCGCTGG
CGCCGCCTGCGCGCGGCCGTGGCGCTCGGTGCGCATACGCAATACGTGGTGACGGTGGGGCTGGTGCCGTTGACGATGCT
GCTGTTTTCGCAAGTCTCGCTCGTGTCCCCCGTGGCGAATGCGCTGGCCATACCCGTCATCAGCCTGGTCGTCACGCCCT
TGTCCCTGGCGGGCAGCCTGCTGCCCGCGCCTTTGTGCGACGGCTTGTTGCTGCTGGCGCATGCCATCGTGCAGATGCTG
GCGCAGGTGCTGGACTGGCTCGGTGCGCGCCGCTTTGCCGTCTGGACGGCGCCCGCGCCGCCATGGTGGAGTTTTTGCTG
GGCATTGTTCGGCACGGCCTGGCTGCTGGCGCCACGCGGATGGCCGCAGCGCTGGGCCGGCATGCTGGGCTGGCTGCCGC
TGCTGACGGCCTTGCCGTCCAGCCCGCAGCCGGGCCAGATGTGGATCACGGCCTTTGATGTGGGACAAGGCATGGCCGTG
CTGGTGGAAACCCACGATCACCGACTGCTGTACGACACGGGCCCCGCCTACAGTCTCGATTCCGACGGCGCCAGCCGTGT
CATCGTGCCGTATCTGCGCGCACGGGGTATCAGCAAGCTCGACGGCGTGATCATCTCGCACAGCGACCTCGATCACGCGG
GCGGCGCTATCTCTCTGCTGGAGAACGTGCAAGTGGGCTGGCTGGCTTCGTCGCTGTTCGATGGCCACCCGGCCGTCGAG
GCCCGGCGGCAAGCCCGGCGTCCGTATCTGCATTGCGTGGCGGGCCAGAACTGGATCTGGGAAGGCGTGCGCTTCGCCAT
GCTGCACCCATTACCCGCCAGCCACACGGACATTTCACTGAAACCGAACGCCCGCAGCTGCACCGTGAAGATCACGGCCG
GCAAGCATGCAATCTTGCTGGCCGGCGACATCGAGGCGGCGCAGGAAGCACAGTTGCTGGCGCGCTCGGCCGATGGCGAC
CTGGCCGCCGACGTGCTGCTGGCGCCGCACCACGGCAGCGGCACCTCGTCGACACCGGCCTTTCTGAACGCCGTCCATCC
GGCCCTGGCGATTTTCCAGGTCGGGCACCGGAACCGCTACAAACATCCGAAGCCGCAAGTGTATGCGCGCTATGGCGACA
TGGGCATTGCCCGGCTGCGCACGGATGTGACGGGGGCGGTGGTGCTGGAATTTGGCGACGATATCGATGCGACGTTGTAC
CGGGCCAGTCGGCCACGGTACTGGCATGGGCGATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-519)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-709)

Domain of unknown function (DUF4131) (DUF4131)

(29-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.337

100

0.493