Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OX462_RS09235 Genome accession   NZ_CP142524
Coordinates   2054177..2055553 (+) Length   458 a.a.
NCBI ID   WP_046683923.1    Uniprot ID   A0A7M2NMH8
Organism   Janthinobacterium sp. SUN098     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049177..2060553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX462_RS09215 (OX462_09215) - 2049631..2050533 (+) 903 WP_409028242.1 uracil-DNA glycosylase -
  OX462_RS09220 (OX462_09220) - 2050526..2051452 (+) 927 WP_409028243.1 DUF1853 family protein -
  OX462_RS09225 (OX462_09225) lplT 2051489..2052751 (-) 1263 WP_230505235.1 lysophospholipid transporter LplT -
  OX462_RS09230 (OX462_09230) alr 2053011..2054102 (+) 1092 WP_409028244.1 alanine racemase -
  OX462_RS09235 (OX462_09235) radA 2054177..2055553 (+) 1377 WP_046683923.1 DNA repair protein RadA Machinery gene
  OX462_RS09240 (OX462_09240) - 2055685..2056005 (+) 321 WP_071650264.1 PilZ domain-containing protein -
  OX462_RS09245 (OX462_09245) fliD 2056234..2057619 (+) 1386 WP_070288697.1 flagellar filament capping protein FliD -
  OX462_RS09250 (OX462_09250) - 2057689..2058459 (-) 771 WP_409028245.1 AraC family transcriptional regulator -
  OX462_RS09255 (OX462_09255) - 2058590..2059825 (+) 1236 WP_070311415.1 MFS transporter -
  OX462_RS09260 (OX462_09260) rraA 2059858..2060352 (+) 495 WP_070223974.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49062.65 Da        Isoelectric Point: 7.2144

>NTDB_id=926043 OX462_RS09235 WP_046683923.1 2054177..2055553(+) (radA) [Janthinobacterium sp. SUN098]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
STLNDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQVIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=926043 OX462_RS09235 WP_046683923.1 2054177..2055553(+) (radA) [Janthinobacterium sp. SUN098]
ATGGCAAAAGTCAAGACCATCTACACCTGCAGCGATTGCGGCGCCATCAGCAACAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAATACCATGGTGGAAACCCTGCCCGAGACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTCGACGATATCGACGCCATCGACGTTCCCCGCTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCGAACATGTCGCACCACAAGCGCGTGCTGTACGTCAGCGGCGAGGAATCGGGCGCGCAGA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAATTGCAGGCGGAGATCCAGCTGGAAAAGATTCTT
TCGACCTTGAACGACCTGAAGCCGGAAGTGGTGGTCATCGACTCGATCCAGACCGTGTATTCGGACGCCCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCGCAGCTGACGCGGGCGGCCAAGCAGACGGGCGTGACGATCATTC
TGGTCGGCCACGTGACGAAAGAGGGCGCGCTGGCCGGCCCCCGCGTGCTCGAGCATATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCCCATTCCAGTTTCCGCCTCGTGCGCGCCATCAAGAACCGTTTCGGCGCGGTCAATGAGCTGGGGGTGTT
CGCCATGACGGAAAAGGGCTTGAAAGGGGTGTCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCTG
GCTCGTGCGTGATGGTGACGCAGGAAGGCACGCGCCCCTTGCTGGTGGAAATCCAGGCCCTCGTCGACACGAGTCACTTG
CCGAATGCGCGCCGGCTGTCCGTCGGCCTGGAACAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCATGCGGG
CATCGCCGCCTTCGACCAGGATGTGTTCATCAACGCCGTCGGCGGCGTCAAGATCACGGAACCGGCGGCCGACCTGGCCG
TATTGTTGGCGATTAACTCGTCGATGCGCAACAAGCCCCTGCCGCGGGGGCTCGTGGTGTTTGGCGAAGTGGGGCTGGCC
GGCGAAATCCGCCCCGCGCCGCGGGGCCAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTGGTGCC
CAAGTCCAACCTGCCGAAGCAAGTCATCGAAGGCCTCAAGGTCATCGGCGTCGAGCGCATTGACGAAGCGTTCAATAAAT
TGCGCGACCTGGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M2NMH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.584

100

0.487
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus mitis SK321

47.391

100

0.476