Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OPV09_RS20640 Genome accession   NZ_CP142523
Coordinates   4589120..4590496 (-) Length   458 a.a.
NCBI ID   WP_034749799.1    Uniprot ID   -
Organism   Janthinobacterium sp. TB1-E2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4584120..4595496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPV09_RS20615 (OPV09_20615) rraA 4584393..4584887 (-) 495 WP_034749787.1 ribonuclease E activity regulator RraA -
  OPV09_RS20620 (OPV09_20620) - 4584920..4586155 (-) 1236 WP_051991020.1 MFS transporter -
  OPV09_RS20625 (OPV09_20625) - 4586256..4587056 (+) 801 WP_034749790.1 helix-turn-helix transcriptional regulator -
  OPV09_RS20630 (OPV09_20630) fliD 4587053..4588438 (-) 1386 WP_034749793.1 flagellar filament capping protein FliD -
  OPV09_RS20635 (OPV09_20635) - 4588670..4589044 (-) 375 WP_307788848.1 PilZ domain-containing protein -
  OPV09_RS20640 (OPV09_20640) radA 4589120..4590496 (-) 1377 WP_034749799.1 DNA repair protein RadA Machinery gene
  OPV09_RS20645 (OPV09_20645) alr 4590583..4591674 (-) 1092 WP_338679252.1 alanine racemase -
  OPV09_RS20650 (OPV09_20650) lplT 4591923..4593185 (+) 1263 WP_034749808.1 lysophospholipid transporter LplT -
  OPV09_RS20655 (OPV09_20655) - 4593221..4594159 (-) 939 WP_338679253.1 DUF1853 family protein -
  OPV09_RS20660 (OPV09_20660) - 4594152..4595051 (-) 900 WP_338679254.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49087.66 Da        Isoelectric Point: 7.2493

>NTDB_id=926030 OPV09_RS20640 WP_034749799.1 4589120..4590496(-) (radA) [Janthinobacterium sp. TB1-E2]
MAKVKTTYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
STLHDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQLIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=926030 OPV09_RS20640 WP_034749799.1 4589120..4590496(-) (radA) [Janthinobacterium sp. TB1-E2]
ATGGCAAAAGTCAAGACCACCTATACCTGCAGCGATTGCGGCGCCATCAGCAACAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAATACCATGGTGGAAACCCTGCCCGAGACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGTTGTCGCTTGACGATATCGACGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCCGGCGGCGTCGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCGAACATGTCGCACCACAAGCGCGTGCTGTACGTCAGCGGCGAGGAATCGGGTGCGCAGA
TCGCCCTGCGGGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAATTGCAGGCCGAGATCCAGCTGGAAAAGATCCTG
TCCACCTTGCACGACCTGAAGCCGGAAGTGGTGGTGATCGATTCGATCCAGACCGTGTATTCGGATGCCCTCAGCTCGGC
TCCTGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCGCAATTGACGCGGGCGGCCAAGCAGACGGGCGTGACCATCATTC
TGGTCGGCCACGTGACGAAAGAGGGCGCGCTGGCCGGTCCCCGCGTGCTCGAGCACATTGTCGATACGGTGCTGTATTTC
GAGGGCGACGCCCATTCCAGCTTCCGCCTCGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAACGAACTGGGCGTGTT
CGCCATGACGGAAAAGGGCTTGAAAGGCGTGTCGAATCCGTCCGCCCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCG
GTTCCTGCGTGATGGTGACGCAGGAAGGCACGCGTCCCTTGCTGGTGGAAATCCAGGCCCTCGTCGACACCAGCCACTTG
CCCAATGCGCGCCGCTTGTCTGTCGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGTCATGCGGG
CATCGCCGCGTTCGACCAGGATGTGTTCATCAATGCCGTCGGCGGCGTGAAGATCACGGAACCGGCGGCCGACCTGGCTG
TCTTGCTGGCAATTAACTCGTCGATGCGCAACAAACCCCTGCCACGGGGATTGGTCGTGTTTGGCGAGGTGGGGCTGGCT
GGTGAAATTCGCCCCGCGCCACGGGGCCAGGAGCGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCTTGGCCGTGGTGCC
CAAGTCCAATTTGCCGAAACAGCTCATCGAAGGCCTCAAGGTCATCGGCGTCGAGCGCATCGACGAAGCGTTCAATAAAC
TCCGCGACTTGGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.584

100

0.487
  radA Streptococcus pneumoniae Rx1

47.826

100

0.48
  radA Streptococcus pneumoniae D39

47.826

100

0.48
  radA Streptococcus pneumoniae R6

47.826

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.826

100

0.48
  radA Streptococcus mitis NCTC 12261

47.826

100

0.48
  radA Streptococcus mitis SK321

47.609

100

0.478