Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OPV09_RS18110 Genome accession   NZ_CP142523
Coordinates   4028310..4030730 (-) Length   806 a.a.
NCBI ID   WP_338679013.1    Uniprot ID   -
Organism   Janthinobacterium sp. TB1-E2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4023310..4035730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPV09_RS18080 (OPV09_18080) dcd 4023363..4023932 (-) 570 WP_034755486.1 dCTP deaminase -
  OPV09_RS18085 (OPV09_18085) - 4024066..4024866 (-) 801 WP_070302763.1 alpha/beta hydrolase -
  OPV09_RS18090 (OPV09_18090) - 4024925..4025620 (-) 696 WP_034755481.1 HAD family phosphatase -
  OPV09_RS18095 (OPV09_18095) - 4025642..4026403 (-) 762 WP_034756294.1 TSUP family transporter -
  OPV09_RS18100 (OPV09_18100) - 4026553..4027488 (+) 936 WP_338679011.1 LysR family transcriptional regulator -
  OPV09_RS18105 (OPV09_18105) - 4027501..4028280 (-) 780 WP_338679012.1 hypothetical protein -
  OPV09_RS18110 (OPV09_18110) comA 4028310..4030730 (-) 2421 WP_338679013.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OPV09_RS18115 (OPV09_18115) - 4030934..4031767 (+) 834 WP_219329894.1 class I SAM-dependent methyltransferase -
  OPV09_RS18120 (OPV09_18120) - 4031917..4032210 (+) 294 WP_219329895.1 hypothetical protein -
  OPV09_RS18125 (OPV09_18125) - 4032901..4034886 (+) 1986 WP_219329896.1 helicase-related protein -
  OPV09_RS18130 (OPV09_18130) - 4034890..4035363 (-) 474 WP_219329897.1 T6SS effector amidase Tae4 family protein -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 86881.15 Da        Isoelectric Point: 10.0016

>NTDB_id=926029 OPV09_RS18110 WP_338679013.1 4028310..4030730(-) (comA) [Janthinobacterium sp. TB1-E2]
MRTLILGFAAGAAWLQTQASLPAQAGALLWVIAGAGLTASLALRRYARWRCVVALAAGVGLGFYWAAWLAQAAMAPQLAL
ADEGQDIVVTGTIASLPYRFEQGVRFNFAVEKAVGAKVPPLIALSWYAGFRDAVTNAVGDVQPGERWRLTVRLQRPHGNA
NPMGFDYEAWLLEQGVRATGYVRPQPRADMPNLRLAAFVPGFGNVVEASRAALRARIARSLEGKQYAGVIVALVVGDQRA
IPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGALWRRSFFTDWQLPLRLPAQKVAALAGALAAFLYVLLAGFGVP
AQRTLYMLLVVALALWLGRITSIVHILCLALGVVVLLDPWAVLWPGFWLSFGAVATMLYATAGRTTAPMPPQAGRWRRLR
GAVALGARTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLVVTPLSLAGSLLPAPLSDGLLLLAHAIVQMLAQVL
EWLGARRFAVWTAPAPPTWSFCWALFGTAWLLAPRGWPHRWAGMLGWLPLLTALPSSPPPGQMWITAFDVGQGMAVLVET
HGHRLLYDTGPAYSLDSDGASRVIVPYLRARGIAELDGVIISHSDLDHAGGAMSLLENVQVGWLASSLFDGHPAVEFQRE
SHRPYLHCTAGQSWTWEGVHFAMLHPLPASHTDIALKPNARSCTVKITVGKHAILLAGDIEAAQEAQLLARSAEGELAAD
VLLAPHHGSGTSSTPAFLSAVHPALAIFQVGHRNRYKHPKPQVYARYGDMGIARLRTDVTGAAVLEFGGNIDVTQYRASR
PRYWYY

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=926029 OPV09_RS18110 WP_338679013.1 4028310..4030730(-) (comA) [Janthinobacterium sp. TB1-E2]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCCGCCTGGTTGCAGACGCAGGCAAGCTTGCCTGCGCAGGCGGGCGC
GCTGCTGTGGGTAATTGCTGGTGCAGGGTTGACGGCTAGTCTGGCGCTGCGTCGCTACGCGCGCTGGCGCTGCGTTGTTG
CGCTCGCCGCTGGCGTAGGCCTCGGCTTTTACTGGGCCGCGTGGCTGGCCCAGGCGGCCATGGCGCCGCAACTGGCGCTG
GCTGACGAAGGGCAGGACATTGTTGTTACGGGCACCATCGCCAGCTTGCCCTACCGCTTCGAGCAGGGCGTGCGCTTCAA
CTTTGCCGTAGAAAAGGCGGTTGGGGCGAAGGTGCCGCCCTTGATCGCCCTGTCCTGGTACGCGGGTTTTCGCGATGCAG
TGACGAACGCCGTGGGCGACGTGCAGCCGGGCGAGCGCTGGCGCCTCACGGTGCGGCTGCAGCGTCCGCACGGCAATGCG
AATCCCATGGGTTTCGATTACGAGGCGTGGCTGCTGGAGCAGGGCGTGCGCGCCACCGGTTATGTGCGGCCGCAGCCGCG
CGCGGACATGCCGAACCTGCGCCTGGCTGCCTTCGTGCCCGGCTTCGGCAACGTGGTGGAGGCCAGCCGCGCAGCCCTGC
GCGCGCGCATCGCCCGCAGCCTGGAAGGCAAGCAGTATGCGGGCGTGATCGTGGCGCTGGTGGTGGGCGATCAGCGCGCC
ATTCCCCAGTCCGACTGGCAAGTGTTCAACCGCACGGGCGTCAGCCATCTGATTTCGATTTCCGGCTTGCACATCACCAT
GATCGCAGGACTGTTCGCGTTGGGCGCAGGCGCATTGTGGCGCCGCTCATTCTTTACCGACTGGCAGCTGCCCTTGCGGT
TGCCGGCGCAAAAAGTGGCGGCGCTGGCCGGTGCGCTGGCGGCCTTTCTTTATGTGCTGCTGGCCGGCTTTGGCGTGCCA
GCGCAGCGCACCTTGTATATGTTGCTGGTGGTGGCGCTGGCCTTGTGGCTGGGGCGCATCACCAGCATCGTCCATATCCT
GTGCCTGGCGCTGGGCGTCGTCGTGCTGCTCGATCCGTGGGCCGTGCTGTGGCCCGGTTTCTGGCTGTCGTTCGGTGCCG
TCGCCACCATGCTGTACGCGACGGCGGGCCGTACCACGGCGCCCATGCCGCCGCAGGCTGGCCGCTGGCGTCGCCTGCGC
GGGGCCGTGGCGCTGGGCGCGCGCACGCAATACGTGGTGACGGTGGGGCTGGTGCCGTTGACGATGCTGCTGTTCTCGCA
AGTGTCCTTGGTCAGCCCCGTGGCCAATGCGCTGGCCATTCCCGTCATCAGCCTGGTCGTCACGCCTTTGTCGCTGGCGG
GCAGCCTGCTGCCTGCGCCTTTGTCCGATGGACTGTTGCTGCTGGCGCACGCCATCGTGCAGATGCTGGCGCAGGTGCTG
GAATGGCTGGGCGCGCGCCGCTTTGCCGTGTGGACGGCGCCCGCGCCGCCAACGTGGAGTTTTTGCTGGGCATTGTTTGG
CACGGCATGGCTGCTGGCACCACGCGGATGGCCGCACCGCTGGGCCGGCATGCTGGGCTGGCTGCCGCTGCTGACGGCCT
TGCCGTCCAGCCCGCCACCTGGCCAGATGTGGATCACGGCCTTTGACGTGGGACAAGGCATGGCTGTGCTGGTGGAAACG
CATGGCCACCGTCTGCTGTACGACACGGGACCCGCCTACAGCCTCGATTCCGATGGCGCCAGCAGGGTCATCGTGCCGTA
TTTGCGCGCACGCGGCATCGCCGAACTTGACGGCGTCATCATTTCCCACAGCGACCTCGATCACGCGGGCGGCGCCATGT
CCCTGCTCGAGAACGTGCAGGTGGGCTGGCTGGCCTCGTCGCTGTTCGATGGCCATCCGGCCGTCGAGTTCCAGCGGGAA
TCGCACCGGCCTTATCTGCACTGCACGGCGGGCCAGAGCTGGACCTGGGAAGGCGTGCACTTCGCCATGCTGCACCCATT
GCCCGCCAGCCATACGGACATTGCCCTGAAGCCGAACGCCCGCAGCTGCACCGTGAAAATCACGGTAGGCAAGCACGCGA
TCCTGCTGGCCGGCGACATCGAAGCGGCGCAGGAGGCGCAATTGCTGGCCCGTTCTGCCGAGGGGGAACTGGCAGCCGAC
GTGTTGCTCGCACCCCATCATGGCAGCGGTACGTCATCGACGCCGGCATTTTTGAGTGCCGTCCATCCGGCCCTGGCGAT
TTTCCAGGTGGGACACAGGAATCGCTATAAACATCCGAAGCCGCAAGTGTATGCGCGCTATGGCGACATGGGCATTGCCC
GGCTGCGCACGGATGTGACGGGGGCGGCGGTGCTGGAATTCGGGGGCAATATCGATGTGACGCAGTATCGGGCCAGCCGG
CCGCGGTATTGGTATTATTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(233-516)

Domain of unknown function (DUF4131) (DUF4131)

(28-184)

Metallo-beta-lactamase superfamily (Lactamase_B)

(550-636)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.957

100

0.495