Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OPV09_RS03890 Genome accession   NZ_CP142523
Coordinates   867681..869159 (+) Length   492 a.a.
NCBI ID   WP_034753328.1    Uniprot ID   A0AAX0I6X8
Organism   Janthinobacterium sp. TB1-E2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 862681..874159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPV09_RS03865 (OPV09_03865) - 864117..865127 (+) 1011 WP_092718375.1 KpsF/GutQ family sugar-phosphate isomerase -
  OPV09_RS03870 (OPV09_03870) - 865127..865660 (+) 534 WP_046681707.1 HAD hydrolase family protein -
  OPV09_RS03875 (OPV09_03875) lptC 865703..866314 (+) 612 WP_034753320.1 LPS export ABC transporter periplasmic protein LptC -
  OPV09_RS03880 (OPV09_03880) lptA 866340..866921 (+) 582 WP_034753322.1 lipopolysaccharide transport periplasmic protein LptA -
  OPV09_RS03885 (OPV09_03885) lptB 866921..867676 (+) 756 WP_034753325.1 LPS export ABC transporter ATP-binding protein -
  OPV09_RS03890 (OPV09_03890) rpoN/rpoN1 867681..869159 (+) 1479 WP_034753328.1 RNA polymerase factor sigma-54 Machinery gene
  OPV09_RS03895 (OPV09_03895) raiA 869229..869591 (+) 363 WP_034753331.1 ribosome-associated translation inhibitor RaiA -
  OPV09_RS03900 (OPV09_03900) - 869725..870810 (+) 1086 WP_072457687.1 enoyl-CoA hydratase/isomerase family protein -
  OPV09_RS03905 (OPV09_03905) rapZ 870811..871674 (-) 864 WP_034753336.1 RNase adapter RapZ -
  OPV09_RS03910 (OPV09_03910) hprK 872040..872975 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  OPV09_RS03915 (OPV09_03915) - 873012..873494 (-) 483 WP_034753339.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54553.23 Da        Isoelectric Point: 5.1075

>NTDB_id=926020 OPV09_RS03890 WP_034753328.1 867681..869159(+) (rpoN/rpoN1) [Janthinobacterium sp. TB1-E2]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
GQEAPAAPAEAETFDGEAGEGPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHIAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDDEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=926020 OPV09_RS03890 WP_034753328.1 867681..869159(+) (rpoN/rpoN1) [Janthinobacterium sp. TB1-E2]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACGCTGGAATTGCACCAGGAACTCGAGCAACTGCTGACGGACAATCCCCTGCTCGAGCGCCTCGACGATCCGC
TCGACCGTTCGCTGCGCCTGCTGTCCGACGGGGCCTTGAGCTCCACGGCCGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGAGGCACCCGCGGCGCCGGCCGAAGCGGAAACCTTTGACGGCGAGGCGGGCGAAGGCCCGGCCGCGGCGGATGG
CGGCGACAGCGACTGGAGCGAGGCGAGCCGGGGCAAGGCGCCCGACGACGAAGATTCCCGCCCGCAACTCGAGGCCCATC
ACTGCACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTTGAGTTGCGCGACCGTGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCCGACGAGATGCGCACGGCCTTGTCGCTGCTGCAAAGTTTCGATCCACCCGGCGTGGGCGCGCGCAATGCAT
CCGAATGCCTGGCGCTGCAGATCAAGCGCTTGCCGCACATCGCCATGGTGACGCGGCGCATGGCGCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGATGAAGACTTGCGCGA
AGCACAGACGGTGATTCGCCAGTGCAATCCGCATCCGGGCGCCGTATTCGCCTCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTGACCCTGAACAACGACGTCATGCCGCGCCTGCGCGTCAACGCC
ATGTACGCCAACCTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGCGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGTTTCGACACGATCCTGCGCGTGGCACAGGCAATAGTAGAAAGACAAAAGAACTTTTTCTCGCACG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.714

100

0.622