Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VVL01_RS02735 Genome accession   NZ_CP142519
Coordinates   645566..646927 (+) Length   453 a.a.
NCBI ID   WP_272973207.1    Uniprot ID   -
Organism   Croceibacter atlanticus strain CE21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640566..651927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVL01_RS02720 (VVL01_02720) - 642389..642781 (-) 393 WP_327018963.1 hypothetical protein -
  VVL01_RS02725 (VVL01_02725) - 642867..643520 (-) 654 WP_013186061.1 response regulator -
  VVL01_RS02730 (VVL01_02730) - 643520..645526 (-) 2007 WP_327018964.1 sensor histidine kinase -
  VVL01_RS02735 (VVL01_02735) radA 645566..646927 (+) 1362 WP_272973207.1 DNA repair protein RadA Machinery gene
  VVL01_RS02740 (VVL01_02740) - 647088..648221 (+) 1134 WP_327018965.1 M23 family metallopeptidase -
  VVL01_RS02745 (VVL01_02745) - 648297..649658 (+) 1362 WP_013186065.1 acyl-CoA dehydrogenase family protein -
  VVL01_RS02750 (VVL01_02750) greA 649755..650231 (-) 477 WP_013186066.1 transcription elongation factor GreA -
  VVL01_RS02755 (VVL01_02755) - 650456..650893 (+) 438 WP_272973205.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49728.16 Da        Isoelectric Point: 7.0596

>NTDB_id=926009 VVL01_RS02735 WP_272973207.1 645566..646927(+) (radA) [Croceibacter atlanticus strain CE21]
MAKTKTTFFCQNCGTQYSKWQGQCSACKEWNTIAEEVIQKAEKSDWKTAATPKKRVAKPQKVADISYTQEQRYNTKNNEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLMLQIALQLPFKTLYVSGEESAQQIKMRAERIDNSESNCFILTETKTQNIFKQV
EAIEPDIVVIDSIQTLHSDYIESSAGSISQIRECTTELIKFAKETATPVILIGHITKDGNIAGPKVLEHMVDTVLQFEGD
RNHIYRILRAQKNRFGSTHELGIYEMQGSGLREVANPSEILLSKNEDDLSGTAIAATLEGMRPLMIEIQALVSSAVYGTP
QRSATGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNVTGGISVDDPAIDLAVVAAVLSSNEDIHVPKDICFAAEVGLAGEI
RPVPKIEQRILEAEKLGFASIMISRYCKLPKETYGINVVKAAKITDVVHYLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=926009 VVL01_RS02735 WP_272973207.1 645566..646927(+) (radA) [Croceibacter atlanticus strain CE21]
ATGGCCAAAACTAAAACTACCTTTTTCTGCCAAAACTGTGGCACACAATATTCAAAATGGCAAGGCCAATGTTCTGCTTG
TAAAGAGTGGAATACTATTGCCGAAGAGGTCATACAAAAAGCTGAAAAAAGTGATTGGAAAACTGCTGCTACACCTAAGA
AAAGAGTGGCTAAACCACAAAAGGTTGCAGACATCTCTTACACTCAAGAACAACGCTACAATACTAAAAACAATGAGCTA
AATCGTGTTTTAGGTGGTGGCTTAGTGCCAGGAAGCTTAACACTTCTTGGCGGTGAACCTGGTATAGGTAAAAGTACCTT
AATGCTTCAAATAGCGTTACAGCTTCCGTTTAAAACTCTTTATGTTTCTGGAGAAGAAAGTGCTCAACAAATAAAAATGA
GGGCAGAACGTATAGATAATTCAGAAAGTAATTGCTTTATCTTAACTGAAACTAAGACACAAAACATTTTTAAGCAAGTA
GAAGCTATTGAGCCAGATATTGTGGTTATAGACTCTATACAAACACTTCATTCAGATTATATAGAAAGTAGCGCTGGTAG
CATTTCTCAAATTAGAGAATGTACTACAGAGCTTATAAAGTTTGCTAAAGAAACAGCTACACCAGTTATTTTAATTGGTC
ATATTACCAAAGACGGAAACATTGCCGGACCAAAAGTCTTAGAGCATATGGTAGATACTGTTTTGCAGTTTGAAGGCGAC
AGAAATCATATTTATAGAATTCTTAGAGCTCAAAAAAACCGTTTTGGTAGTACTCATGAACTTGGTATTTATGAAATGCA
AGGCTCTGGTTTGAGAGAAGTTGCCAATCCTAGTGAAATATTACTATCTAAAAATGAAGATGACCTAAGTGGTACTGCTA
TTGCAGCAACTCTTGAGGGTATGCGCCCATTAATGATAGAGATACAAGCCCTAGTAAGCTCTGCTGTTTACGGTACTCCA
CAACGAAGCGCTACAGGATATAACGCCAAACGACTTAATATGCTTTTAGCTGTTTTAGAAAAAAGAGCTGGATTTAAATT
AGGTGCAAAAGATGTCTTTTTAAATGTAACCGGTGGAATTTCTGTAGATGATCCTGCAATTGATCTCGCTGTGGTTGCAG
CTGTTTTATCCAGCAATGAAGATATTCATGTTCCTAAAGATATTTGTTTTGCCGCAGAAGTAGGTTTAGCAGGAGAAATA
AGACCTGTACCAAAGATAGAGCAACGAATACTAGAAGCTGAGAAACTAGGCTTTGCATCAATTATGATTTCACGCTATTG
TAAACTTCCGAAGGAAACCTATGGCATCAACGTGGTAAAAGCGGCGAAAATTACAGATGTTGTGCATTATCTTTTTGGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(341-424)

AAA domain (AAA_25)

(64-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.69

100

0.492
  radA Streptococcus pneumoniae Rx1

48.69

100

0.492
  radA Streptococcus pneumoniae D39

48.69

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.69

100

0.492
  radA Streptococcus mitis NCTC 12261

48.472

100

0.49
  radA Bacillus subtilis subsp. subtilis str. 168

47.939

100

0.488
  radA Streptococcus mitis SK321

50.117

94.26

0.472