Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VUQ07_RS04985 Genome accession   NZ_CP142436
Coordinates   1064869..1066245 (-) Length   458 a.a.
NCBI ID   WP_111951151.1    Uniprot ID   -
Organism   Dolosigranulum savutiense strain MSK211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059869..1071245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ07_RS04955 (VUQ07_04955) - 1059992..1060552 (+) 561 WP_142970660.1 hypothetical protein -
  VUQ07_RS04960 (VUQ07_04960) - 1061000..1061140 (+) 141 WP_185908181.1 hypothetical protein -
  VUQ07_RS04965 (VUQ07_04965) - 1061770..1061892 (-) 123 WP_258392291.1 hypothetical protein -
  VUQ07_RS04970 (VUQ07_04970) - 1062633..1062809 (-) 177 WP_347298994.1 hypothetical protein -
  VUQ07_RS04975 (VUQ07_04975) - 1063261..1063647 (+) 387 WP_347297850.1 hypothetical protein -
  VUQ07_RS04980 (VUQ07_04980) - 1063719..1064822 (-) 1104 WP_347297849.1 PIN/TRAM domain-containing protein -
  VUQ07_RS04985 (VUQ07_04985) radA 1064869..1066245 (-) 1377 WP_111951151.1 DNA repair protein RadA Machinery gene
  VUQ07_RS04990 (VUQ07_04990) - 1066298..1066834 (-) 537 WP_347297848.1 dUTP diphosphatase -
  VUQ07_RS04995 (VUQ07_04995) - 1066971..1068080 (-) 1110 WP_347297847.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  VUQ07_RS05000 (VUQ07_05000) - 1068358..1068669 (+) 312 WP_347297846.1 iron-sulfur cluster biosynthesis protein -
  VUQ07_RS05005 (VUQ07_05005) pgeF 1068804..1069532 (-) 729 WP_347297845.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50104.30 Da        Isoelectric Point: 5.8932

>NTDB_id=925982 VUQ07_RS04985 WP_111951151.1 1064869..1066245(-) (radA) [Dolosigranulum savutiense strain MSK211]
MAKKKVNFMCNECGIESPKYLGRCPSCGAWDSFVEAPKAADEDQKDNRKRVSLTGERATPTLITEVEVEREDRVTVPFSE
FNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAFLNNQGAKVLYVSGEESASQIKMRAERLEVVGANFYLYAETDLSYI
QDAIQKLRPDFVIVDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKTNDIGIFIVGHVTKEGSIAGPRMLEHMVDTVLY
FEGEQHHTFRVLRAVKNRFGSTNEIGIFEMNEDGLKEVHNPSQLFLEERLAGTNGSAVVAAMEGTRPILVEIQSLIAPTA
FGHAKRTASGLDYSRVSLIMAVLEKRAGLLLQNYDAYLKAAGGVKLDEPAIDLSIAMSIVSSYKEKETQATDCFIGEIGL
TGEIRRVSKIEARVTEAAKLGFKRVFIPKNNIDGWTHPEGIEVIGCATVSEVMKRTFN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=925982 VUQ07_RS04985 WP_111951151.1 1064869..1066245(-) (radA) [Dolosigranulum savutiense strain MSK211]
ATGGCGAAGAAAAAAGTAAATTTCATGTGCAACGAGTGTGGGATTGAATCTCCGAAGTATTTGGGAAGATGTCCATCTTG
CGGGGCGTGGGATTCCTTCGTAGAAGCGCCAAAAGCAGCGGACGAAGACCAAAAAGATAACCGTAAAAGGGTCTCCTTAA
CAGGGGAGAGAGCGACACCGACCTTAATTACAGAGGTAGAAGTAGAGCGTGAAGATCGTGTGACAGTCCCTTTCAGTGAG
TTCAACCGTGTGCTGGGTGGCGGGATTGTCCCGGGCTCACTCGTCTTGATCGGGGGAGATCCCGGCATTGGGAAGTCCAC
CCTGTTGCTTCAGATCTCAGCTTTCTTGAATAATCAAGGGGCGAAGGTGCTCTACGTTTCGGGCGAAGAGAGTGCTAGCC
AAATTAAGATGCGAGCGGAACGCTTAGAAGTTGTTGGGGCGAACTTTTACTTATATGCGGAGACCGATTTGAGTTATATT
CAAGATGCGATTCAGAAGTTGCGACCGGACTTTGTCATTGTGGATTCGATCCAGACGATGCACCATCCGAATATTGATAG
TGCATCAGGTAGTGTATCGCAAGTGCGTGAGTCGACAGCCACCTTGATGCAGCTCGCGAAGACGAATGATATTGGGATCT
TCATTGTTGGTCACGTGACGAAGGAAGGCTCGATTGCGGGGCCACGTATGTTAGAGCATATGGTGGATACTGTGCTTTAC
TTCGAAGGAGAACAACATCATACGTTCCGAGTCTTGCGCGCTGTGAAGAATCGGTTCGGTTCGACTAACGAGATTGGTAT
CTTCGAGATGAATGAAGATGGACTAAAAGAGGTGCATAATCCGAGTCAGCTGTTCTTAGAAGAACGGCTGGCGGGGACGA
ATGGCTCAGCTGTTGTCGCAGCGATGGAGGGAACGCGTCCGATTTTAGTAGAGATTCAGTCGCTCATTGCCCCGACTGCC
TTTGGTCATGCCAAGCGAACAGCAAGTGGCCTGGATTACTCGCGCGTCTCCTTAATCATGGCTGTATTGGAGAAGCGAGC
AGGCCTTTTATTACAAAATTATGATGCCTACTTGAAGGCAGCAGGTGGAGTGAAGTTAGATGAGCCGGCGATTGACTTAA
GTATCGCGATGAGCATCGTCTCCAGCTATAAGGAAAAAGAAACCCAAGCCACGGACTGCTTTATCGGAGAGATTGGCTTA
ACTGGCGAAATTCGACGAGTCTCTAAAATTGAAGCACGGGTTACGGAAGCGGCTAAGTTAGGCTTCAAGCGTGTCTTTAT
TCCGAAGAATAATATAGACGGCTGGACGCATCCTGAGGGTATCGAAGTCATCGGCTGTGCCACTGTCTCAGAAGTAATGA
AGCGAACATTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.646

99.782

0.655
  radA Streptococcus pneumoniae Rx1

65.646

99.782

0.655
  radA Streptococcus pneumoniae D39

65.646

99.782

0.655
  radA Streptococcus pneumoniae R6

65.646

99.782

0.655
  radA Streptococcus pneumoniae TIGR4

65.646

99.782

0.655
  radA Streptococcus mitis SK321

65.646

99.782

0.655
  radA Bacillus subtilis subsp. subtilis str. 168

63.974

100

0.64