Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VUQ06_RS06485 Genome accession   NZ_CP142435
Coordinates   1365639..1367453 (+) Length   604 a.a.
NCBI ID   WP_347300146.1    Uniprot ID   -
Organism   Dolosigranulum savutiense strain MSK294     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360639..1372453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ06_RS06450 (VUQ06_06450) infC 1360775..1361281 (+) 507 WP_347297467.1 translation initiation factor IF-3 -
  VUQ06_RS06455 (VUQ06_06455) rpmI 1361308..1361508 (+) 201 WP_347297466.1 50S ribosomal protein L35 -
  VUQ06_RS06460 (VUQ06_06460) rplT 1361539..1361901 (+) 363 WP_347297465.1 50S ribosomal protein L20 -
  VUQ06_RS06465 (VUQ06_06465) - 1362084..1363103 (+) 1020 WP_347300143.1 lipoate--protein ligase -
  VUQ06_RS06470 (VUQ06_06470) - 1363128..1363520 (+) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  VUQ06_RS06475 (VUQ06_06475) - 1363621..1364265 (+) 645 WP_347300144.1 adaptor protein MecA -
  VUQ06_RS06480 (VUQ06_06480) - 1364371..1365483 (+) 1113 WP_347300145.1 competence protein CoiA family protein -
  VUQ06_RS06485 (VUQ06_06485) pepF 1365639..1367453 (+) 1815 WP_347300146.1 oligoendopeptidase F Regulator
  VUQ06_RS06490 (VUQ06_06490) - 1367587..1368213 (-) 627 WP_347300147.1 DsbA family protein -
  VUQ06_RS06495 (VUQ06_06495) - 1368307..1368900 (-) 594 WP_347300148.1 CYTH domain-containing protein -
  VUQ06_RS06500 (VUQ06_06500) - 1368994..1369617 (+) 624 WP_347300149.1 GTP pyrophosphokinase family protein -
  VUQ06_RS06505 (VUQ06_06505) - 1369625..1370437 (+) 813 WP_347300150.1 NAD kinase -
  VUQ06_RS06510 (VUQ06_06510) - 1370427..1371326 (+) 900 WP_347300151.1 RluA family pseudouridine synthase -
  VUQ06_RS06515 (VUQ06_06515) - 1371368..1371820 (-) 453 WP_347300152.1 GNAT family N-acetyltransferase -
  VUQ06_RS06520 (VUQ06_06520) - 1371813..1372277 (-) 465 WP_347300153.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69445.29 Da        Isoelectric Point: 4.5006

>NTDB_id=925964 VUQ06_RS06485 WP_347300146.1 1365639..1367453(+) (pepF) [Dolosigranulum savutiense strain MSK294]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWEQDFEAIDDLKDKFVSFQGTLGEGADKFLTAFETLLDLNRKLSKVFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSPETIDRYFAEAEELQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEAGEEVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSDNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYEGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPKEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALEAYLDYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKAIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=925964 VUQ06_RS06485 WP_347300146.1 1365639..1367453(+) (pepF) [Dolosigranulum savutiense strain MSK294]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCTAAAACATGGGATTTAACAACTATTTATGAAAG
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTAAGCTTCCAAGGTACTTTGGGTG
AAGGAGCGGATAAATTTCTAACAGCATTTGAAACATTACTGGATTTAAACCGCAAGTTGAGTAAAGTCTTTGTATACTCT
CACTTGAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTGAAATATGCTGAAGT
TGCGGAGGCGCGTTCTTGGTTTACACCAGAATTGCTGTCACTCTCACCGGAAACGATTGATCGTTACTTTGCTGAGGCGG
AAGAACTTCAACCTTACAAACATGAAATTGAAACAATTTTAGCTGATCGAGATCACGTTTTAAGTGCTGAGAAAGAGGCA
TTATTGGCTGGGGCTAGCGATATCTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGCGGGTGAAGAAGTTCAACTGTCCCATGGGTTGTATGGAGAATTAATTCAGAGTACAGATCGTT
CCGTACGTCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTGAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAACTATTTAGCACGCGTACACCATTACGATTCAGCGCGTCATCAAGCGTTATCGGACAACCATAT
TCCAGAGAGTGTACATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCGTTACGTA
AGGAATTACTTGGTCTTGATGAGTTGCATATGTATGATTTGTATCCACCGATTACGGGGGATGATAGCCTAGAGTATTCA
TTTGAAGAAGCAAAAGAGGCAACCTACGAAGGATTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAGGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGTATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCACGATTCTTTAAATCACTTGTACACCTTAGTGCATGAATTGGGCCACAGTGCGCACAGT
TACTTCACACGTAATAACCAGCCGTATGTGTACGGGGACTATTCTATCTTCTTGGCTGAGATTGCCAGCACTACAAATGA
GAATCTATTAACAGATTATCTCTTGAAGAAAGCGGACTCGCCTAAAGAGAAAGCTCTTATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGCCAGACACAATTTGCTGAATTCGAGCACAAGATTCATACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCCGAAATTAATGATAAGTTTTATGGAGATGTTGTTGTTAATGATGA
AGAAATCCAGTATGAATGGTCGCGTATTCCGCATTTCTACATGGGCTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCCACAGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGCGCGCTAGAGGCTTACTTGGATTACTTGAAATCCGGT
AGTAGCGATTACCCGATTGAAGTGATGAAAAAAGCCGGTCTCGACATGACGAATAAAGATTACTTGCAACGAGCGATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTCAAAGCCATTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.104

98.841

0.535