Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VUQ06_RS03820 Genome accession   NZ_CP142435
Coordinates   807639..809015 (-) Length   458 a.a.
NCBI ID   WP_111951151.1    Uniprot ID   -
Organism   Dolosigranulum savutiense strain MSK294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802639..814015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ06_RS03790 (VUQ06_03790) - 803648..804142 (-) 495 WP_004635195.1 hypothetical protein -
  VUQ06_RS03795 (VUQ06_03795) - 804123..804716 (-) 594 WP_208957790.1 ATP-binding cassette domain-containing protein -
  VUQ06_RS03800 (VUQ06_03800) - 804740..805858 (-) 1119 WP_347301747.1 hypothetical protein -
  VUQ06_RS03805 (VUQ06_03805) - 805943..806110 (-) 168 WP_172764097.1 hypothetical protein -
  VUQ06_RS03810 (VUQ06_03810) - 806268..806417 (+) 150 WP_347301748.1 hypothetical protein -
  VUQ06_RS03815 (VUQ06_03815) - 806489..807592 (-) 1104 WP_347297849.1 PIN/TRAM domain-containing protein -
  VUQ06_RS03820 (VUQ06_03820) radA 807639..809015 (-) 1377 WP_111951151.1 DNA repair protein RadA Machinery gene
  VUQ06_RS03825 (VUQ06_03825) - 809068..809604 (-) 537 WP_347301749.1 dUTP diphosphatase -
  VUQ06_RS03830 (VUQ06_03830) - 809741..810850 (-) 1110 WP_347301750.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  VUQ06_RS03835 (VUQ06_03835) - 811128..811439 (+) 312 WP_004635215.1 HesB/YadR/YfhF family protein -
  VUQ06_RS03840 (VUQ06_03840) pgeF 811588..812316 (-) 729 WP_347301751.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50104.30 Da        Isoelectric Point: 5.8932

>NTDB_id=925957 VUQ06_RS03820 WP_111951151.1 807639..809015(-) (radA) [Dolosigranulum savutiense strain MSK294]
MAKKKVNFMCNECGIESPKYLGRCPSCGAWDSFVEAPKAADEDQKDNRKRVSLTGERATPTLITEVEVEREDRVTVPFSE
FNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAFLNNQGAKVLYVSGEESASQIKMRAERLEVVGANFYLYAETDLSYI
QDAIQKLRPDFVIVDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKTNDIGIFIVGHVTKEGSIAGPRMLEHMVDTVLY
FEGEQHHTFRVLRAVKNRFGSTNEIGIFEMNEDGLKEVHNPSQLFLEERLAGTNGSAVVAAMEGTRPILVEIQSLIAPTA
FGHAKRTASGLDYSRVSLIMAVLEKRAGLLLQNYDAYLKAAGGVKLDEPAIDLSIAMSIVSSYKEKETQATDCFIGEIGL
TGEIRRVSKIEARVTEAAKLGFKRVFIPKNNIDGWTHPEGIEVIGCATVSEVMKRTFN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=925957 VUQ06_RS03820 WP_111951151.1 807639..809015(-) (radA) [Dolosigranulum savutiense strain MSK294]
ATGGCGAAGAAAAAAGTAAATTTCATGTGCAACGAGTGTGGGATTGAATCTCCGAAGTATTTGGGAAGATGTCCATCTTG
CGGGGCGTGGGATTCCTTCGTAGAAGCGCCAAAAGCAGCGGACGAAGACCAAAAAGATAACCGTAAAAGGGTCTCCTTAA
CAGGGGAGAGAGCGACACCGACCTTAATTACAGAGGTAGAAGTAGAGCGTGAAGATCGTGTGACAGTCCCTTTCAGTGAG
TTCAACCGTGTGCTGGGTGGCGGGATTGTCCCGGGCTCACTCGTCTTGATCGGGGGAGATCCCGGCATTGGGAAGTCCAC
CCTGTTGCTTCAGATCTCAGCTTTCTTGAATAATCAAGGGGCGAAGGTGCTCTACGTTTCGGGCGAAGAGAGTGCTAGCC
AAATTAAGATGCGAGCGGAACGCTTAGAAGTTGTCGGAGCGAACTTTTACTTATATGCGGAGACTGATTTGAGTTATATT
CAAGATGCGATTCAGAAGTTGCGACCGGACTTTGTCATTGTGGATTCGATTCAGACAATGCACCATCCGAATATTGATAG
TGCATCTGGTAGTGTATCGCAAGTGCGTGAATCGACCGCCACCTTGATGCAGCTCGCGAAGACGAATGATATTGGGATCT
TCATTGTTGGTCACGTGACGAAGGAAGGCTCGATTGCGGGGCCACGTATGCTAGAACATATGGTGGACACTGTGCTTTAC
TTCGAAGGGGAACAACATCATACGTTCCGAGTCTTGCGCGCCGTGAAGAATCGGTTCGGTTCGACTAACGAGATTGGTAT
CTTCGAGATGAATGAAGATGGACTAAAAGAAGTGCATAATCCGAGTCAGCTATTCTTAGAAGAGCGGCTGGCGGGGACGA
ATGGCTCAGCCGTTGTTGCTGCAATGGAGGGAACGCGTCCGATTTTAGTAGAGATTCAGTCGCTCATTGCCCCGACTGCC
TTTGGTCATGCCAAGCGAACAGCAAGTGGCCTGGATTACTCGCGCGTCTCCTTAATCATGGCTGTATTGGAGAAGCGAGC
AGGTCTTTTATTACAAAATTATGATGCCTACTTGAAGGCAGCAGGTGGAGTGAAGTTAGATGAGCCGGCGATTGACTTAA
GTATCGCGATGAGCATCGTCTCCAGCTATAAGGAAAAAGAAACCCAAGCCACGGACTGCTTTATCGGAGAGATTGGCTTA
ACTGGCGAAATTCGACGAGTCTCTAAAATTGAAGCACGGGTTACGGAAGCAGCTAAGTTAGGCTTCAAGCGTGTCTTTAT
TCCCAAGAATAATATAGACGGCTGGACGCATCCTGAGGGTATCGAAGTCATCGGCTGTGCCACTGTCTCAGAAGTAATGA
AGCGAACATTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.646

99.782

0.655
  radA Streptococcus pneumoniae Rx1

65.646

99.782

0.655
  radA Streptococcus pneumoniae D39

65.646

99.782

0.655
  radA Streptococcus pneumoniae R6

65.646

99.782

0.655
  radA Streptococcus pneumoniae TIGR4

65.646

99.782

0.655
  radA Streptococcus mitis SK321

65.646

99.782

0.655
  radA Bacillus subtilis subsp. subtilis str. 168

63.974

100

0.64