Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VUQ09_RS09515 Genome accession   NZ_CP142434
Coordinates   2008982..2010358 (+) Length   458 a.a.
NCBI ID   WP_111951151.1    Uniprot ID   -
Organism   Dolosigranulum savutiense strain MSK312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003982..2015358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ09_RS09495 (VUQ09_09495) pgeF 2005695..2006423 (+) 729 WP_347297845.1 peptidoglycan editing factor PgeF -
  VUQ09_RS09500 (VUQ09_09500) - 2006558..2006869 (-) 312 WP_347297846.1 iron-sulfur cluster biosynthesis protein -
  VUQ09_RS09505 (VUQ09_09505) - 2007147..2008256 (+) 1110 WP_347297847.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  VUQ09_RS09510 (VUQ09_09510) - 2008393..2008929 (+) 537 WP_347297848.1 dUTP diphosphatase -
  VUQ09_RS09515 (VUQ09_09515) radA 2008982..2010358 (+) 1377 WP_111951151.1 DNA repair protein RadA Machinery gene
  VUQ09_RS09520 (VUQ09_09520) - 2010405..2011508 (+) 1104 WP_347297849.1 PIN/TRAM domain-containing protein -
  VUQ09_RS09525 (VUQ09_09525) - 2011580..2011966 (-) 387 WP_347297850.1 hypothetical protein -
  VUQ09_RS09530 (VUQ09_09530) - 2012427..2012594 (+) 168 WP_172764097.1 hypothetical protein -
  VUQ09_RS09535 (VUQ09_09535) - 2013335..2013457 (+) 123 WP_258392291.1 hypothetical protein -
  VUQ09_RS09540 (VUQ09_09540) - 2014087..2014227 (-) 141 WP_185908181.1 hypothetical protein -
  VUQ09_RS09545 (VUQ09_09545) - 2014675..2015235 (-) 561 WP_142970660.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50104.30 Da        Isoelectric Point: 5.8932

>NTDB_id=925947 VUQ09_RS09515 WP_111951151.1 2008982..2010358(+) (radA) [Dolosigranulum savutiense strain MSK312]
MAKKKVNFMCNECGIESPKYLGRCPSCGAWDSFVEAPKAADEDQKDNRKRVSLTGERATPTLITEVEVEREDRVTVPFSE
FNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAFLNNQGAKVLYVSGEESASQIKMRAERLEVVGANFYLYAETDLSYI
QDAIQKLRPDFVIVDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKTNDIGIFIVGHVTKEGSIAGPRMLEHMVDTVLY
FEGEQHHTFRVLRAVKNRFGSTNEIGIFEMNEDGLKEVHNPSQLFLEERLAGTNGSAVVAAMEGTRPILVEIQSLIAPTA
FGHAKRTASGLDYSRVSLIMAVLEKRAGLLLQNYDAYLKAAGGVKLDEPAIDLSIAMSIVSSYKEKETQATDCFIGEIGL
TGEIRRVSKIEARVTEAAKLGFKRVFIPKNNIDGWTHPEGIEVIGCATVSEVMKRTFN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=925947 VUQ09_RS09515 WP_111951151.1 2008982..2010358(+) (radA) [Dolosigranulum savutiense strain MSK312]
ATGGCGAAGAAAAAAGTAAATTTCATGTGCAACGAGTGTGGGATTGAATCTCCGAAGTATTTGGGAAGATGTCCATCTTG
CGGGGCGTGGGATTCCTTCGTAGAAGCGCCAAAAGCAGCGGACGAAGACCAAAAAGATAACCGTAAAAGGGTCTCCTTAA
CAGGGGAGAGAGCGACACCGACCTTAATTACAGAGGTAGAAGTAGAGCGTGAAGATCGTGTGACAGTCCCTTTCAGTGAG
TTCAACCGTGTGCTGGGTGGCGGGATTGTCCCGGGCTCACTCGTCTTGATCGGGGGAGATCCCGGCATTGGGAAGTCCAC
CCTGTTGCTTCAGATCTCAGCTTTCTTGAATAATCAAGGGGCGAAGGTGCTCTACGTTTCGGGCGAAGAGAGTGCTAGCC
AAATTAAGATGCGAGCGGAACGCTTAGAAGTTGTTGGGGCGAACTTTTACTTATATGCGGAGACCGATTTGAGTTATATT
CAAGATGCGATTCAGAAGTTGCGACCGGACTTTGTCATTGTGGATTCGATCCAGACGATGCACCATCCGAATATTGATAG
TGCATCAGGTAGTGTATCGCAAGTGCGTGAGTCGACAGCCACCTTGATGCAGCTCGCGAAGACGAATGATATTGGGATCT
TCATTGTTGGTCACGTGACGAAGGAAGGCTCGATTGCGGGGCCACGTATGTTAGAGCATATGGTGGATACTGTGCTTTAC
TTCGAAGGAGAACAACATCATACGTTCCGAGTCTTGCGCGCTGTGAAGAATCGGTTCGGTTCGACTAACGAGATTGGTAT
CTTCGAGATGAATGAAGATGGACTAAAAGAGGTGCATAATCCGAGTCAGCTGTTCTTAGAAGAACGGCTGGCGGGGACGA
ATGGCTCAGCTGTTGTCGCAGCGATGGAGGGAACGCGTCCGATTTTAGTAGAGATTCAGTCGCTCATTGCCCCGACTGCC
TTTGGTCATGCCAAGCGAACAGCAAGTGGCCTGGATTACTCGCGCGTCTCCTTAATCATGGCTGTATTGGAGAAGCGAGC
AGGCCTTTTATTACAAAATTATGATGCCTACTTGAAGGCAGCAGGTGGAGTGAAGTTAGATGAGCCGGCGATTGACTTAA
GTATCGCGATGAGCATCGTCTCCAGCTATAAGGAAAAAGAAACCCAAGCCACGGACTGCTTTATCGGAGAGATTGGCTTA
ACTGGCGAAATTCGACGAGTCTCTAAAATTGAAGCACGGGTTACGGAAGCGGCTAAGTTAGGCTTCAAGCGTGTCTTTAT
TCCGAAGAATAATATAGACGGCTGGACGCATCCTGAGGGTATCGAAGTCATCGGCTGTGCCACTGTCTCAGAAGTAATGA
AGCGAACATTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.646

99.782

0.655
  radA Streptococcus pneumoniae Rx1

65.646

99.782

0.655
  radA Streptococcus pneumoniae D39

65.646

99.782

0.655
  radA Streptococcus pneumoniae R6

65.646

99.782

0.655
  radA Streptococcus pneumoniae TIGR4

65.646

99.782

0.655
  radA Streptococcus mitis SK321

65.646

99.782

0.655
  radA Bacillus subtilis subsp. subtilis str. 168

63.974

100

0.64