Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB6N08_RS16045 Genome accession   NZ_CP163448
Coordinates   3257505..3258497 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli O102:H6 strain M2021_10044824_1_E     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252505..3263497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N08_RS16020 (AB6N08_16015) rbsD 3252629..3253048 (+) 420 WP_000715936.1 D-ribose pyranase -
  AB6N08_RS16025 (AB6N08_16020) rbsA 3253056..3254561 (+) 1506 WP_057950848.1 ribose ABC transporter ATP-binding protein RbsA -
  AB6N08_RS16030 (AB6N08_16025) rbsC 3254566..3255531 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  AB6N08_RS16035 (AB6N08_16030) rbsB 3255556..3256443 (+) 888 WP_020233744.1 ribose ABC transporter substrate-binding protein RbsB -
  AB6N08_RS16040 (AB6N08_16035) rbsK 3256572..3257501 (+) 930 WP_021523308.1 ribokinase -
  AB6N08_RS16045 (AB6N08_16040) cytR 3257505..3258497 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  AB6N08_RS16050 (AB6N08_16045) mdtD 3258463..3259890 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  AB6N08_RS16055 (AB6N08_16050) yieP 3259913..3260605 (-) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=925946 AB6N08_RS16045 WP_000224470.1 3257505..3258497(+) (cytR) [Escherichia coli O102:H6 strain M2021_10044824_1_E]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=925946 AB6N08_RS16045 WP_000224470.1 3257505..3258497(+) (cytR) [Escherichia coli O102:H6 strain M2021_10044824_1_E]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACTGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364