Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VUQ09_RS06870 Genome accession   NZ_CP142434
Coordinates   1447532..1449346 (-) Length   604 a.a.
NCBI ID   WP_347297461.1    Uniprot ID   A0AB74TWI2
Organism   Dolosigranulum savutiense strain MSK312     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442532..1454346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ09_RS06835 (VUQ09_06835) - 1442727..1443191 (+) 465 WP_347297455.1 GNAT family N-acetyltransferase -
  VUQ09_RS06840 (VUQ09_06840) - 1443184..1443636 (+) 453 WP_347297456.1 GNAT family N-acetyltransferase -
  VUQ09_RS06845 (VUQ09_06845) - 1443678..1444577 (-) 900 WP_347297457.1 RluA family pseudouridine synthase -
  VUQ09_RS06850 (VUQ09_06850) - 1444567..1445379 (-) 813 WP_347297458.1 NAD kinase -
  VUQ09_RS06855 (VUQ09_06855) - 1445381..1446010 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  VUQ09_RS06860 (VUQ09_06860) - 1446103..1446690 (+) 588 WP_347297459.1 CYTH domain-containing protein -
  VUQ09_RS06865 (VUQ09_06865) - 1446784..1447410 (+) 627 WP_347297460.1 DsbA family protein -
  VUQ09_RS06870 (VUQ09_06870) pepF 1447532..1449346 (-) 1815 WP_347297461.1 oligoendopeptidase F Regulator
  VUQ09_RS06875 (VUQ09_06875) - 1449490..1450602 (-) 1113 WP_347297462.1 competence protein CoiA family protein -
  VUQ09_RS06880 (VUQ09_06880) - 1450708..1451352 (-) 645 WP_347297463.1 adaptor protein MecA -
  VUQ09_RS06885 (VUQ09_06885) - 1451453..1451845 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  VUQ09_RS06890 (VUQ09_06890) - 1451870..1452889 (-) 1020 WP_347297464.1 lipoate--protein ligase -
  VUQ09_RS06895 (VUQ09_06895) rplT 1453072..1453434 (-) 363 WP_347297465.1 50S ribosomal protein L20 -
  VUQ09_RS06900 (VUQ09_06900) rpmI 1453465..1453665 (-) 201 WP_347297466.1 50S ribosomal protein L35 -
  VUQ09_RS06905 (VUQ09_06905) infC 1453692..1454198 (-) 507 WP_347297467.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69614.52 Da        Isoelectric Point: 4.5476

>NTDB_id=925940 VUQ09_RS06870 WP_347297461.1 1447532..1449346(-) (pepF) [Dolosigranulum savutiense strain MSK312]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWERDFEAIDDLKDKFVNFQGTLGEGADKFLTAFETLLDLNRKLSKVFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSPETIDRYFAEAEELQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSDNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDNSLEYS
FEEAKEATYEGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPKEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALEAYLDYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=925940 VUQ09_RS06870 WP_347297461.1 1447532..1449346(-) (pepF) [Dolosigranulum savutiense strain MSK312]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGACTTAACAACTATTTATGAAAG
TGATGAAGCTTGGGAACGAGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
AAGGAGCGGATAAATTTCTAACAGCATTTGAAACATTACTGGATTTAAACCGCAAGTTGAGTAAAGTCTTTGTATACTCT
CACTTGAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACCCTTAATGACCGCGCACGCTTGAAATATGCTGAAGT
TGCAGAAGCGCGTTCTTGGTTTACACCAGAATTGCTGTCACTCTCACCGGAAACGATTGATCGTTACTTTGCTGAGGCGG
AAGAACTTCAACCTTACAAACATGAAATTGAAACAATTTTAGCTGATCGAGATCACGTTTTAAGTGCTGAGAAAGAAGCG
TTATTGGCTGGGGCTAGCGATATTTTATCATCTGGAAGCCAAACCTTCTCAATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTCCAATTATCACACGGTTTATACGGAGAGTTGATTCAAAGCACGGATCGAT
CAGTACGTCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTGAATAATACATTCGCATCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGCGTACACCATTACGATTCAGCGCGTCATCAAGCGTTATCGGACAACCATAT
TCCAGAGAGTGTACATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCGTTACGTA
AGGAATTACTTGGTCTTGATGAGTTGCATATGTATGATTTGTATCCACCGATTACTGGGGATAATAGCCTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACCTACGAAGGATTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCACGATTCTTTAAATCACTTGTACACCTTAGTGCATGAATTGGGTCACAGTGCGCACAGT
TACTTCACACGTAATAACCAGCCGTATGTGTACGGGGACTATTCTATCTTCTTGGCTGAGATTGCCAGCACTACGAACGA
GAATCTATTAACAGATTATCTCTTGAAGAAAGCGGACTCGCCTAAAGAGAAAGCTCTTATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGCCAGACACAATTTGCTGAATTCGAGCACAAGATTCATACTGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCCGAAATTAATGATAAGTTTTATGGAGATGTTGTTGTTAATGATGA
AGAGATCCAGTATGAATGGTCGCGTATTCCGCATTTCTACATGGGATACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCCACAGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGCGCGCTAGAGGCTTACTTGGATTACTTGAAATCCGGT
AGTAGCGATTACCCGATTGAAGTGATGAAAAAAGCCGGTCTCGACATGACGAATAAAGATTACTTGCAACGAGCGATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.013

99.007

0.535