Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VUQ08_RS04875 Genome accession   NZ_CP142433
Coordinates   1058398..1059774 (-) Length   458 a.a.
NCBI ID   WP_112779167.1    Uniprot ID   -
Organism   Dolosigranulum savutiense strain MSK433     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1053398..1064774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ08_RS04830 (VUQ08_04835) - 1053877..1054011 (+) 135 WP_269089737.1 hypothetical protein -
  VUQ08_RS04835 (VUQ08_04840) - 1054031..1054201 (+) 171 WP_201711360.1 hypothetical protein -
  VUQ08_RS04840 (VUQ08_04845) - 1054591..1054725 (-) 135 WP_269089738.1 hypothetical protein -
  VUQ08_RS04845 (VUQ08_04850) - 1055000..1055122 (-) 123 WP_269089739.1 hypothetical protein -
  VUQ08_RS04850 (VUQ08_04855) - 1055610..1055756 (-) 147 WP_347299806.1 hypothetical protein -
  VUQ08_RS04855 (VUQ08_04860) - 1055871..1056131 (-) 261 WP_347299807.1 hypothetical protein -
  VUQ08_RS04860 (VUQ08_04865) - 1056161..1056337 (-) 177 WP_347299808.1 hypothetical protein -
  VUQ08_RS04865 (VUQ08_04870) - 1056791..1057177 (+) 387 WP_111949656.1 hypothetical protein -
  VUQ08_RS04870 (VUQ08_04875) - 1057248..1058351 (-) 1104 WP_077863089.1 PIN/TRAM domain-containing protein -
  VUQ08_RS04875 (VUQ08_04880) radA 1058398..1059774 (-) 1377 WP_112779167.1 DNA repair protein RadA Machinery gene
  VUQ08_RS04880 (VUQ08_04885) - 1059827..1060363 (-) 537 WP_077863088.1 dUTP diphosphatase -
  VUQ08_RS04885 (VUQ08_04890) - 1060500..1061609 (-) 1110 WP_077863087.1 ABC transporter ATP-binding protein -
  VUQ08_RS04890 (VUQ08_04895) - 1061887..1062198 (+) 312 WP_004635215.1 HesB/YadR/YfhF family protein -
  VUQ08_RS04895 (VUQ08_04900) pgeF 1062317..1063045 (-) 729 WP_004635217.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50093.27 Da        Isoelectric Point: 5.8921

>NTDB_id=925910 VUQ08_RS04875 WP_112779167.1 1058398..1059774(-) (radA) [Dolosigranulum savutiense strain MSK433]
MAKKKVNFMCSECGIESPKYLGRCPSCGAWDSFVEAPKAADEDQKDNRKRVSLTGERATPTLITEVEVEREDRVTVPFSE
FNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAFLNNQGAKVLYVSGEESASQIKMRAERLEVVGANFYLYAETDLSYI
QDAIQKLRPDFVIVDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKTNDIGIFIVGHVTKEGSIAGPRMLEHMVDTVLY
FEGEQHHTFRVLRAVKNRFGSTNEIGIFEMNEDGLKEVHNPSQLFLEERLAGTNGSAVVAAMEGTRPILVEIQSLIAPTA
FGHAKRTASGLDYSRVSLIMAVLEKRAGLLLQNYDAYLKAAGGVKLDEPAIDLSIAMSIVSSYKEKETQATDCFIGEIGL
TGEIRRVSKIEARVTEAAKLGFKRVFIPKNNIDGWTHPDGIEVIGCTTVSEVMKRTFN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=925910 VUQ08_RS04875 WP_112779167.1 1058398..1059774(-) (radA) [Dolosigranulum savutiense strain MSK433]
ATGGCGAAGAAAAAAGTAAATTTCATGTGCAGCGAGTGTGGGATTGAATCTCCGAAGTATTTGGGAAGATGTCCATCTTG
CGGGGCATGGGATTCCTTCGTAGAAGCGCCAAAAGCAGCGGATGAAGACCAAAAAGATAACCGCAAAAGGGTCTCCTTAA
CGGGGGAGAGAGCGACACCGACCTTAATTACAGAGGTAGAAGTAGAGCGTGAAGATCGTGTGACAGTCCCTTTCAGTGAG
TTCAACCGTGTGCTGGGTGGCGGGATTGTCCCGGGCTCACTCGTCTTGATCGGAGGAGATCCCGGCATTGGGAAGTCCAC
CCTGCTGCTTCAGATCTCAGCTTTCTTGAATAATCAAGGGGCGAAGGTGCTCTACGTTTCGGGGGAAGAGAGTGCTAGCC
AAATTAAGATGCGAGCGGAACGCTTAGAAGTTGTCGGGGCGAACTTTTACTTATATGCGGAGACCGATTTGAGTTATATT
CAAGATGCGATTCAGAAGTTGCGACCGGATTTTGTCATTGTGGATTCGATTCAGACGATGCACCATCCGAATATTGATAG
TGCATCCGGTAGTGTATCGCAAGTGCGTGAATCGACAGCCACCTTGATGCAGCTCGCGAAGACGAATGATATCGGGATCT
TCATTGTTGGTCACGTGACGAAGGAAGGCTCGATTGCGGGGCCACGTATGTTAGAGCATATGGTGGATACCGTGCTTTAC
TTCGAAGGGGAACAACATCATACGTTCCGAGTCTTGCGCGCCGTGAAGAATCGGTTCGGTTCGACTAACGAGATTGGCAT
CTTCGAGATGAATGAAGATGGACTAAAAGAAGTGCATAATCCGAGTCAGCTGTTCTTAGAAGAGCGGCTGGCGGGGACGA
ATGGCTCAGCCGTTGTCGCTGCAATGGAGGGAACGCGTCCGATTTTGGTAGAGATTCAGTCGCTCATTGCCCCGACTGCC
TTTGGTCATGCCAAGCGAACTGCAAGCGGCCTGGATTATTCGCGCGTCTCCTTAATCATGGCTGTATTGGAGAAGCGAGC
AGGGCTTTTATTACAAAATTATGATGCCTACTTGAAGGCAGCAGGTGGCGTGAAGTTAGATGAGCCGGCGATTGACTTAA
GTATCGCGATGAGCATCGTCTCCAGCTATAAGGAAAAAGAAACCCAAGCCACGGATTGCTTTATCGGAGAGATTGGCTTA
ACTGGCGAAATTCGACGAGTCTCTAAAATTGAAGCACGGGTTACGGAAGCAGCTAAGTTAGGCTTCAAGCGTGTCTTTAT
TCCGAAGAATAATATAGACGGCTGGACGCATCCTGACGGTATCGAAGTCATCGGCTGTACCACTGTCTCAGAAGTAATGA
AGCGAACATTTAACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.864

99.782

0.657
  radA Streptococcus pneumoniae Rx1

65.864

99.782

0.657
  radA Streptococcus pneumoniae D39

65.864

99.782

0.657
  radA Streptococcus pneumoniae R6

65.864

99.782

0.657
  radA Streptococcus pneumoniae TIGR4

65.864

99.782

0.657
  radA Streptococcus mitis SK321

65.864

99.782

0.657
  radA Bacillus subtilis subsp. subtilis str. 168

63.755

100

0.638