Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AB5991_RS17065 Genome accession   NZ_CP163447
Coordinates   3178765..3179490 (-) Length   241 a.a.
NCBI ID   WP_014480811.1    Uniprot ID   -
Organism   Bacillus subtilis strain SD2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3173765..3184490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS17050 (AB5991_17050) - 3174145..3175941 (-) 1797 WP_014480806.1 M3 family oligoendopeptidase -
  AB5991_RS17055 (AB5991_17055) - 3177189..3177317 (-) 129 WP_014480809.1 hypothetical protein -
  AB5991_RS17060 (AB5991_17060) - 3177572..3178768 (-) 1197 WP_029318434.1 ABC transporter permease -
  AB5991_RS17065 (AB5991_17065) pptA 3178765..3179490 (-) 726 WP_014480811.1 ABC transporter ATP-binding protein Regulator
  AB5991_RS17070 (AB5991_17070) - 3179548..3180654 (-) 1107 WP_014480812.1 methyltransferase -
  AB5991_RS17075 (AB5991_17075) - 3180684..3181925 (-) 1242 WP_014480813.1 MFS transporter -
  AB5991_RS17080 (AB5991_17080) - 3181915..3182439 (-) 525 WP_014480814.1 GNAT family N-acetyltransferase -
  AB5991_RS17085 (AB5991_17085) - 3182439..3183773 (-) 1335 WP_014480815.1 glutathionylspermidine synthase family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27577.45 Da        Isoelectric Point: 7.9039

>NTDB_id=925868 AB5991_RS17065 WP_014480811.1 3178765..3179490(-) (pptA) [Bacillus subtilis strain SD2]
MLRVEQVTGGYKRNKMANHNISFQIDKGEIVGLVGLNGAGKSTIIKHILGILKPTEGRVTLDGVSLRDDPSYFRPRISYI
PEVPQLYQELTLWEHLEFTASAYKMKREKFELKAAELLKKFRMEKKINDYPQTFSKGMQQKVMILCAFLVEAVFFIIDEP
FVGLDPLAIDTLIDLMVEMKQRGMGILVSTHILTMAEKYCDRVVFLHEGKVKVQGTIQEIQDQMKMNDVSLEEMFIGVVK
N

Nucleotide


Download         Length: 726 bp        

>NTDB_id=925868 AB5991_RS17065 WP_014480811.1 3178765..3179490(-) (pptA) [Bacillus subtilis strain SD2]
ATGTTGCGCGTAGAACAGGTTACAGGAGGTTATAAGCGTAATAAGATGGCAAACCACAATATTTCTTTTCAGATTGATAA
AGGGGAAATAGTTGGTTTAGTTGGGCTAAATGGTGCGGGGAAAAGCACGATCATTAAGCACATCTTAGGTATCTTAAAAC
CCACTGAAGGCCGTGTTACACTTGATGGTGTGTCATTAAGAGATGATCCCTCCTATTTTAGGCCGCGTATTTCCTATATC
CCTGAAGTTCCTCAATTATATCAAGAATTAACTCTTTGGGAACATTTGGAATTCACTGCATCAGCTTATAAAATGAAAAG
AGAAAAATTCGAATTAAAAGCGGCCGAACTGTTAAAAAAATTTAGAATGGAAAAAAAAATAAATGATTACCCGCAGACTT
TTTCGAAGGGGATGCAACAAAAGGTTATGATTCTTTGTGCCTTCTTGGTTGAAGCAGTTTTCTTTATTATTGATGAACCC
TTTGTTGGGCTAGATCCTTTAGCAATTGATACATTAATTGATTTAATGGTTGAAATGAAACAGAGGGGAATGGGAATCCT
TGTTTCTACTCATATTTTAACTATGGCTGAAAAATATTGTGACCGTGTTGTTTTCTTACATGAGGGAAAGGTTAAGGTGC
AAGGAACCATTCAGGAAATTCAAGATCAGATGAAAATGAATGATGTTTCATTAGAAGAAATGTTTATTGGGGTTGTGAAA
AATTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

48.548

100

0.485
  pptA Streptococcus thermophilus LMD-9

48.548

100

0.485