Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   AB5991_RS16280 Genome accession   NZ_CP163447
Coordinates   3032850..3033713 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain SD2     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3027850..3038713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS16245 (AB5991_16245) mrpE 3028018..3028494 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AB5991_RS16250 (AB5991_16250) mrpF 3028494..3028778 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AB5991_RS16255 (AB5991_16255) mnhG 3028762..3029136 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  AB5991_RS16260 (AB5991_16260) yuxO 3029175..3029555 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  AB5991_RS16265 (AB5991_16265) comA 3029574..3030218 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AB5991_RS16270 (AB5991_16270) comP 3030299..3032611 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  AB5991_RS16275 (AB5991_16275) comX 3032627..3032848 (-) 222 WP_014480704.1 competence pheromone ComX -
  AB5991_RS16280 (AB5991_16280) comQ 3032850..3033713 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  AB5991_RS16285 (AB5991_16285) degQ 3033898..3034038 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AB5991_RS16290 (AB5991_16290) - 3034260..3034385 (+) 126 WP_003228793.1 hypothetical protein -
  AB5991_RS16295 (AB5991_16295) - 3034499..3034867 (+) 369 WP_014477834.1 hypothetical protein -
  AB5991_RS16300 (AB5991_16300) pdeH 3034843..3036072 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  AB5991_RS16305 (AB5991_16305) pncB 3036208..3037680 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  AB5991_RS16310 (AB5991_16310) pncA 3037696..3038247 (-) 552 WP_014480709.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=925866 AB5991_RS16280 WP_014480705.1 3032850..3033713(-) (comQ) [Bacillus subtilis strain SD2]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=925866 AB5991_RS16280 WP_014480705.1 3032850..3033713(-) (comQ) [Bacillus subtilis strain SD2]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439