Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AB5991_RS15285 Genome accession   NZ_CP163447
Coordinates   2848491..2849201 (-) Length   236 a.a.
NCBI ID   WP_014480585.1    Uniprot ID   -
Organism   Bacillus subtilis strain SD2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843491..2854201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS15265 (AB5991_15265) cysK 2843543..2844478 (+) 936 WP_003229237.1 cysteine synthase A -
  AB5991_RS15270 (AB5991_15270) pepV 2844512..2845903 (-) 1392 WP_014480582.1 dipeptidase PepV -
  AB5991_RS15275 (AB5991_15275) pbuO 2846000..2847298 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  AB5991_RS15280 (AB5991_15280) ythQ 2847337..2848494 (-) 1158 WP_014480584.1 ABC transporter permease -
  AB5991_RS15285 (AB5991_15285) pptA 2848491..2849201 (-) 711 WP_014480585.1 ABC transporter ATP-binding protein Regulator
  AB5991_RS15290 (AB5991_15290) ytzE 2849491..2849712 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  AB5991_RS15295 (AB5991_15295) rsuA 2849834..2850553 (-) 720 WP_014480587.1 pseudouridine synthase -
  AB5991_RS15300 (AB5991_15300) murJ 2850622..2852256 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  AB5991_RS15305 (AB5991_15305) ytfP 2852459..2853721 (+) 1263 WP_072557170.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26545.69 Da        Isoelectric Point: 5.8478

>NTDB_id=925862 AB5991_RS15285 WP_014480585.1 2848491..2849201(-) (pptA) [Bacillus subtilis strain SD2]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEGREFVHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=925862 AB5991_RS15285 WP_014480585.1 2848491..2849201(-) (pptA) [Bacillus subtilis strain SD2]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGGGAGAGAATTTGTGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432