Detailed information NTG0925846

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: AB5991_RS13360
• Genome accession: NZ_CP163447
• Coordinates: 2476621..2477748 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SD2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2471621..2482748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5991_RS13340 (AB5991_13340)	-	2471668..2471880 (-)	213	Protein_2579	recombinase family protein	-
AB5991_RS13345 (AB5991_13345)	fumC	2472099..2473487 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
AB5991_RS13350 (AB5991_13350)	-	2473654..2474544 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
AB5991_RS13355 (AB5991_13355)	-	2475486..2475881 (+)	396	WP_014480327.1	VOC family protein	-
AB5991_RS13360 (AB5991_13360)	rapC	2476621..2477748 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
AB5991_RS13365 (AB5991_13365)	-	2477930..2479856 (+)	1927	Protein_2584	ribonuclease YeeF family protein	-
AB5991_RS13370 (AB5991_13370)	-	2479870..2480157 (+)	288	WP_014480331.1	hypothetical protein	-
AB5991_RS13375 (AB5991_13375)	-	2480560..2481000 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
AB5991_RS13380 (AB5991_13380)	-	2481099..2481551 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
AB5991_RS13385 (AB5991_13385)	cdiI	2481648..2482007 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
AB5991_RS13390 (AB5991_13390)	-	2482079..2482591 (+)	513	WP_014477426.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=925846 AB5991_RS13360 WP_014480328.1 2476621..2477748(-) (rapC) [Bacillus subtilis strain SD2]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=925846 AB5991_RS13360 WP_014480328.1 2476621..2477748(-) (rapC) [Bacillus subtilis strain SD2]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397