Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8663_RS05895 Genome accession   NZ_AP028331
Coordinates   1135543..1136037 (+) Length   164 a.a.
NCBI ID   WP_317675919.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10091     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130543..1141037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8663_RS05880 (B10091_11580) - 1131929..1133107 (-) 1179 WP_002856548.1 metal-dependent hydrolase -
  R8663_RS05885 (B10091_11590) gpsA 1133117..1134013 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8663_RS05890 (B10091_11600) gatB 1134010..1135428 (-) 1419 WP_002859278.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8663_RS05895 (B10091_11610) luxS 1135543..1136037 (+) 495 WP_317675919.1 S-ribosylhomocysteine lyase Regulator
  R8663_RS05900 (B10091_11620) - 1136349..1137341 (+) 993 WP_002852878.1 isopenicillin N synthase family dioxygenase -
  R8663_RS05905 (B10091_11630) - 1137352..1138122 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8663_RS05910 (B10091_11640) metE 1138134..1140398 (+) 2265 WP_002887822.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18228.29 Da        Isoelectric Point: 7.3250

>NTDB_id=92583 R8663_RS05895 WP_317675919.1 1135543..1136037(+) (luxS) [Campylobacter jejuni strain BCH-10091]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTLDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=92583 R8663_RS05895 WP_317675919.1 1135543..1136037(+) (luxS) [Campylobacter jejuni strain BCH-10091]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACTAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment