Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   AB5991_RS11820 Genome accession   NZ_CP163447
Coordinates   2210612..2212102 (-) Length   496 a.a.
NCBI ID   WP_014480148.1    Uniprot ID   -
Organism   Bacillus subtilis strain SD2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2205612..2217102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS11790 (AB5991_11790) gudB 2205766..2207040 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  AB5991_RS11795 (AB5991_11795) mecB 2207196..2207780 (-) 585 WP_003230533.1 genetic competence negative regulator -
  AB5991_RS11800 (AB5991_11800) ypbG 2207939..2208718 (-) 780 WP_014480146.1 metallophosphoesterase -
  AB5991_RS11805 (AB5991_11805) ypbF 2208804..2209247 (-) 444 WP_014480147.1 YpbF family protein -
  AB5991_RS11810 (AB5991_11810) claE 2209310..2210032 (-) 723 WP_004398603.1 LysM peptidoglycan-binding domain-containing protein -
  AB5991_RS11815 (AB5991_11815) ypbD 2209983..2210585 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  AB5991_RS11820 (AB5991_11820) recS 2210612..2212102 (-) 1491 WP_014480148.1 ATP-dependent DNA helicase RecQ Machinery gene
  AB5991_RS11825 (AB5991_11825) gmmB 2212095..2213153 (-) 1059 WP_014480149.1 helix-turn-helix domain-containing protein -
  AB5991_RS11830 (AB5991_11830) fdxA 2213419..2213667 (+) 249 WP_003225461.1 ferredoxin -
  AB5991_RS11835 (AB5991_11835) fmnP 2213707..2214279 (-) 573 WP_014480150.1 riboflavin transporter FmnP -
  AB5991_RS11840 (AB5991_11840) serA 2214776..2216353 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56464.09 Da        Isoelectric Point: 6.5562

>NTDB_id=925827 AB5991_RS11820 WP_014480148.1 2210612..2212102(-) (recS) [Bacillus subtilis strain SD2]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYELKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=925827 AB5991_RS11820 WP_014480148.1 2210612..2212102(-) (recS) [Bacillus subtilis strain SD2]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTCGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992