Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB5991_RS06975 Genome accession   NZ_CP163447
Coordinates   1326371..1327507 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SD2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321371..1332507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS06950 (AB5991_06950) yjnA 1322070..1322834 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  AB5991_RS06955 (AB5991_06955) bstD 1323053..1323517 (-) 465 WP_014479541.1 DinB family protein -
  AB5991_RS06960 (AB5991_06960) yjoB 1323666..1324766 (+) 1101 Protein_1307 ATPase YjoB -
  AB5991_RS06970 (AB5991_06970) - 1326053..1326226 (+) 174 Protein_1309 ATPase -
  AB5991_RS06975 (AB5991_06975) rapC 1326371..1327507 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  AB5991_RS06980 (AB5991_06980) phrA 1327497..1327631 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AB5991_RS06985 (AB5991_06985) yjpA 1327662..1327908 (-) 247 Protein_1312 YciI family protein -
  AB5991_RS06990 (AB5991_06990) xlyB 1328029..1328982 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  AB5991_RS06995 (AB5991_06995) yjqA 1329022..1329399 (-) 378 WP_014479546.1 PH domain-containing protein -
  AB5991_RS07000 (AB5991_07000) pghB 1329504..1330106 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  AB5991_RS07005 (AB5991_07005) xpdC 1330183..1331019 (+) 837 WP_003245071.1 manganese catalase family protein -
  AB5991_RS07010 (AB5991_07010) xkdA 1331063..1331659 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  AB5991_RS07015 (AB5991_07015) xre 1331822..1332163 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=925796 AB5991_RS06975 WP_015252291.1 1326371..1327507(+) (rapC) [Bacillus subtilis strain SD2]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=925796 AB5991_RS06975 WP_015252291.1 1326371..1327507(+) (rapC) [Bacillus subtilis strain SD2]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418