Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VSX79_RS01725 Genome accession   NZ_CP142394
Coordinates   349285..350646 (+) Length   453 a.a.
NCBI ID   WP_179498796.1    Uniprot ID   A0A7Y9N9H6
Organism   Sphingopyxis chilensis strain S37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344285..355646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSX79_RS01705 - 344359..345876 (+) 1518 WP_326914233.1 aldehyde dehydrogenase family protein -
  VSX79_RS01710 - 345974..347476 (-) 1503 WP_407697239.1 acetyl-CoA acetyltransferase -
  VSX79_RS01715 - 347478..348272 (-) 795 WP_326914234.1 crotonase/enoyl-CoA hydratase family protein -
  VSX79_RS01720 fsa 348416..349066 (-) 651 WP_088440397.1 fructose-6-phosphate aldolase -
  VSX79_RS01725 radA 349285..350646 (+) 1362 WP_179498796.1 DNA repair protein RadA Machinery gene
  VSX79_RS01730 - 350657..351202 (+) 546 WP_326914235.1 CvpA family protein -
  VSX79_RS01735 - 351199..351627 (+) 429 WP_326914236.1 iron-sulfur cluster assembly scaffold protein -
  VSX79_RS01740 - 351624..353522 (+) 1899 WP_326914237.1 cation:proton antiporter -
  VSX79_RS01745 aroB 353539..354645 (-) 1107 WP_179498804.1 3-dehydroquinate synthase -
  VSX79_RS01750 - 354633..355211 (-) 579 WP_326914238.1 shikimate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47608.31 Da        Isoelectric Point: 5.7565

>NTDB_id=925731 VSX79_RS01725 WP_179498796.1 349285..350646(+) (radA) [Sphingopyxis chilensis strain S37]
MAKAKRQYVCQNCGSATYRWQGQCADCGEWNTLVEEAAETVFSAKHDLSRGGRTLTLETLDADSKMPERMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGKSVVYISGEEAAAQVRLRAQRLGLGNAPVALASATSVRDILATL
DGREADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSDAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVANPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGGYRLTDPAADLAVAAALISAFSERPVPADAIVFGELSLSGE
VRQVAHDGLRLREAAKLGFSRGWGPTGMKGVGGISVTGFGRLGELVDLMLGRD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=925731 VSX79_RS01725 WP_179498796.1 349285..350646(+) (radA) [Sphingopyxis chilensis strain S37]
ATGGCCAAAGCGAAACGTCAATATGTCTGCCAGAATTGCGGCTCCGCCACCTATCGCTGGCAGGGGCAGTGCGCCGATTG
CGGCGAGTGGAACACGCTCGTCGAGGAAGCCGCCGAGACGGTGTTTTCGGCGAAACATGATCTGAGCCGCGGCGGGCGGA
CGCTGACGCTCGAAACGCTCGATGCCGACAGCAAGATGCCCGAGCGGATGCTGTGCGGGATCGCCGAGTTCGACCGCGCG
CTTGGTGGCGGCTTCGTCGCGGGTTCGGCGACCTTGATCGGCGGCGATCCGGGGATCGGCAAGTCGACCTTGCTGCTGCA
GGCGGCGGGACGGCTCGCCAAGGCGGGCAAGTCGGTCGTCTATATCAGCGGCGAGGAAGCGGCGGCGCAGGTGCGGCTGC
GCGCGCAGCGGCTGGGGCTCGGCAATGCGCCGGTCGCGCTGGCGAGCGCGACGTCGGTGCGCGATATCCTGGCGACGCTC
GACGGGCGCGAGGCCGATTTCGTGGTGATCGATTCGATCCAGACGATGCACAGCGACCTGATCGACAGCGCGCCGGGGAC
GGTGAGCCAGGTCCGCGCGTCGGCGCAGGAACTGATCCGCTATGCCAAGGACAGCGACGCCGCGATCGTGCTCGTCGGCC
ATGTCACGAAGGACGGGACGATCGCGGGACCGCGCGTGCTCGAACATATGGTCGATACGGTGCTGGCGTTCGAGGGCGAG
CGCAGCCACCAATATCGCATCCTTCGCGCGGTCAAGAACCGCTTTGGCGGCACGGACGAGATCGGCGTCTTCGCGATGGG
CGAGGAAGGGTTGGGCGAGGTCGCCAATCCGTCGAGCCTGTTCCTGACCGATCGCAGCCGCGACGTGCCCGGGTCGGTGG
TGTTCCCGGCGCTCGAGGGCACACGCCCGGTGCTGGTCGAGGTGCAGGCGCTGACGGTGCGGCTCGCGAGCGGCGCGACG
CCGCGCCGTGCCGTCGTGGGCTGGGACAGCGGGCGGCTCGCGATGGTGCTCGCGGTGCTGGAGGCGCGTTGCGGGCTGCA
GATGGGCGCGGCGGAAGTTTATCTCAACATCGCGGGTGGCTATCGGCTGACCGATCCCGCCGCCGATCTTGCCGTCGCGG
CGGCGCTGATCTCGGCGTTCAGCGAGCGGCCGGTGCCCGCCGATGCGATCGTGTTCGGCGAACTGTCGCTGTCGGGCGAG
GTGCGGCAGGTTGCGCACGACGGGCTGCGTCTGCGCGAAGCGGCCAAGCTCGGTTTTTCGCGCGGCTGGGGCCCCACGGG
AATGAAGGGCGTCGGCGGGATTTCGGTCACGGGTTTCGGACGGCTCGGCGAACTCGTTGACCTGATGCTCGGGCGCGACT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-406)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y9N9H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.084

100

0.481
  radA Streptococcus pneumoniae Rx1

46

99.338

0.457
  radA Streptococcus pneumoniae D39

46

99.338

0.457
  radA Streptococcus pneumoniae R6

46

99.338

0.457
  radA Streptococcus pneumoniae TIGR4

46

99.338

0.457
  radA Streptococcus mitis SK321

46

99.338

0.457
  radA Streptococcus mitis NCTC 12261

45.778

99.338

0.455