Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U5897_RS15280 Genome accession   NZ_CP142393
Coordinates   3146995..3147321 (-) Length   108 a.a.
NCBI ID   WP_000078385.1    Uniprot ID   A0AAQ0VL69
Organism   Acinetobacter baumannii strain 38     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141995..3152321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS15235 (U5897_15235) - 3142591..3142971 (-) 381 WP_002002458.1 hypothetical protein -
  U5897_RS15240 (U5897_15240) - 3142955..3143365 (-) 411 WP_094850395.1 type I restriction-modification system subunit M -
  U5897_RS15245 (U5897_15245) - 3143394..3143891 (-) 498 WP_001067227.1 hypothetical protein -
  U5897_RS15250 (U5897_15250) - 3144422..3144628 (+) 207 WP_000535990.1 hypothetical protein -
  U5897_RS15255 (U5897_15255) - 3144634..3144870 (-) 237 WP_001057663.1 hypothetical protein -
  U5897_RS15260 (U5897_15260) - 3144875..3145564 (-) 690 WP_000389915.1 DUF2786 domain-containing protein -
  U5897_RS15265 (U5897_15265) - 3145683..3146087 (-) 405 WP_001070890.1 hypothetical protein -
  U5897_RS15270 (U5897_15270) - 3146101..3146433 (-) 333 WP_000565581.1 hypothetical protein -
  U5897_RS15275 (U5897_15275) - 3146794..3146982 (-) 189 WP_000427815.1 hypothetical protein -
  U5897_RS15280 (U5897_15280) hns 3146995..3147321 (-) 327 WP_000078385.1 H-NS family nucleoid-associated regulatory protein Regulator
  U5897_RS15285 (U5897_15285) - 3147387..3147863 (-) 477 WP_000861205.1 thermonuclease family protein -
  U5897_RS15290 (U5897_15290) - 3147868..3148083 (-) 216 WP_001012847.1 hypothetical protein -
  U5897_RS15295 (U5897_15295) - 3148142..3148282 (-) 141 WP_000691026.1 hypothetical protein -
  U5897_RS15300 (U5897_15300) - 3148305..3148496 (-) 192 WP_000182323.1 hypothetical protein -
  U5897_RS15305 (U5897_15305) - 3148502..3149098 (-) 597 WP_000095825.1 hypothetical protein -
  U5897_RS15310 (U5897_15310) - 3149270..3149644 (-) 375 WP_000230431.1 hypothetical protein -
  U5897_RS15315 (U5897_15315) - 3149799..3150179 (-) 381 WP_000227378.1 hypothetical protein -
  U5897_RS15320 (U5897_15320) - 3150225..3150749 (-) 525 WP_000100569.1 hypothetical protein -
  U5897_RS15325 (U5897_15325) - 3150715..3151980 (-) 1266 WP_000770546.1 DUF1173 domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12235.03 Da        Isoelectric Point: 8.3959

>NTDB_id=925729 U5897_RS15280 WP_000078385.1 3146995..3147321(-) (hns) [Acinetobacter baumannii strain 38]
MSQISELSIEELKDLQLEAAKLIEIKEEQAIEDAYFKIISIAESVGYSVEDLLKVGAASSKKKARKSVKPRYRSKANEQD
TWTGRGKQPRWLVAEIEKGAKLEDLRIN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=925729 U5897_RS15280 WP_000078385.1 3146995..3147321(-) (hns) [Acinetobacter baumannii strain 38]
ATGTCGCAAATTAGTGAATTATCAATTGAAGAGTTAAAAGATCTTCAGCTTGAAGCAGCCAAATTAATTGAAATCAAAGA
AGAACAAGCCATTGAGGATGCTTATTTTAAAATAATTTCAATTGCAGAAAGCGTAGGATATTCAGTAGAGGATCTTTTGA
AAGTAGGCGCAGCGAGCTCTAAAAAGAAAGCTCGTAAATCTGTAAAACCGCGCTATCGTAGTAAAGCAAACGAACAAGAT
ACTTGGACTGGACGCGGTAAACAACCACGTTGGTTAGTAGCCGAAATTGAAAAAGGTGCGAAACTTGAAGATTTACGTAT
CAACTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

71.154

96.296

0.685