Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB2U05_RS13365 Genome accession   NZ_CP163445
Coordinates   3219597..3220568 (-) Length   323 a.a.
NCBI ID   WP_045696363.1    Uniprot ID   A0A0F2TH55
Organism   Streptomyces sp. Y1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3214597..3225568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2U05_RS13340 (AB2U05_13340) - 3216390..3217706 (+) 1317 WP_369185946.1 MFS transporter -
  AB2U05_RS13345 (AB2U05_13345) - 3217832..3218155 (+) 324 WP_045696369.1 FmdB family zinc ribbon protein -
  AB2U05_RS13350 (AB2U05_13350) - 3218457..3218744 (+) 288 WP_045696367.1 hypothetical protein -
  AB2U05_RS13355 (AB2U05_13355) mscL 3218775..3219191 (+) 417 WP_369183289.1 large conductance mechanosensitive channel protein MscL -
  AB2U05_RS13360 (AB2U05_13360) - 3219211..3219432 (-) 222 WP_369183290.1 hypothetical protein -
  AB2U05_RS13365 (AB2U05_13365) rpoS 3219597..3220568 (-) 972 WP_045696363.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB2U05_RS13370 (AB2U05_13370) - 3221008..3221841 (+) 834 WP_369183291.1 phosphatase PAP2 family protein -
  AB2U05_RS13375 (AB2U05_13375) - 3221852..3222742 (+) 891 WP_369183292.1 carbon-nitrogen hydrolase family protein -
  AB2U05_RS13380 (AB2U05_13380) - 3223050..3224300 (-) 1251 WP_369183293.1 tyrosine-type recombinase/integrase -
  AB2U05_RS13385 (AB2U05_13385) - 3224709..3225065 (-) 357 WP_369183294.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 36496.23 Da        Isoelectric Point: 4.8621

>NTDB_id=925694 AB2U05_RS13365 WP_045696363.1 3219597..3220568(-) (rpoS) [Streptomyces sp. Y1]
MATRAVVRDRADRTRAARPTNLEADRDLVGMYLDEIARTPLLDAAEEVELSLRIEAGVYAQHLLDEDELPKGVTREELEA
IAADAERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQS
RTIRLPVHLVEELGRIRRVQREKSKELGREAEPAEIAAELDTTEARIKDVLDWARDPVSLNMSVDDEGETQFGDLVEDTG
ATSPEDAVMVMLRREELDDLIGRLDDRTASIIRSRYGMEDGRERTLTEVGKQHGLTRERIRQIEKHALAELKKIADHAGF
EAA

Nucleotide


Download         Length: 972 bp        

>NTDB_id=925694 AB2U05_RS13365 WP_045696363.1 3219597..3220568(-) (rpoS) [Streptomyces sp. Y1]
ATGGCCACCCGTGCCGTCGTTCGCGACAGGGCCGACCGGACTCGCGCGGCCCGCCCGACCAACCTCGAAGCCGACCGCGA
CCTGGTGGGCATGTACCTCGACGAGATCGCCAGGACGCCCCTGCTCGATGCCGCCGAGGAGGTCGAGCTCTCGCTGCGGA
TCGAGGCCGGCGTGTACGCCCAGCACCTGCTGGACGAGGACGAGCTGCCGAAGGGCGTCACCCGCGAGGAGCTGGAGGCG
ATAGCCGCCGACGCCGAGCGGGCCAAGGACGTCTTCATCCGCTCGAACCTCCGCCTCGTGGTCGCCGTCGCCCGCCGCTA
CCCGCGCAGCGGTCTCCCGCTGCTCGACCTCATCCAGGAGGGCAATGCGGGCCTGGTGCGCGCGGTCGAGAAGTTCGACT
ACGCGAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCGATCACCCGCTCGATCGCCGACCAGTCC
CGCACGATCCGGCTGCCCGTGCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGCGTCCAGCGGGAGAAGTCCAAGGAGCT
GGGCCGCGAGGCCGAGCCGGCCGAGATCGCGGCCGAGCTGGACACCACCGAGGCCCGGATCAAGGACGTGCTGGACTGGG
CGCGCGACCCGGTCAGCCTCAACATGTCCGTCGACGACGAGGGCGAGACCCAGTTCGGCGACCTGGTCGAGGACACCGGG
GCGACGTCCCCCGAGGACGCCGTGATGGTCATGCTCCGCCGCGAGGAGCTGGACGACCTCATCGGGCGGCTGGACGACCG
CACGGCCTCGATCATCCGCTCCCGCTACGGGATGGAGGACGGCCGCGAGCGCACCCTCACCGAGGTGGGCAAGCAGCACG
GCCTCACCCGCGAGCGGATCCGGCAGATCGAGAAGCACGCGCTGGCCGAGCTGAAGAAGATCGCCGACCACGCGGGCTTC
GAAGCCGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(92-161)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70 region 3 (Sigma70_r3)

(171-247)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2TH55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.136

91.022

0.365