Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB2U05_RS10325 Genome accession   NZ_CP163445
Coordinates   2473909..2474382 (-) Length   157 a.a.
NCBI ID   WP_045698444.1    Uniprot ID   -
Organism   Streptomyces sp. Y1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2468909..2479382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2U05_RS10315 (AB2U05_10315) - 2472876..2473178 (-) 303 WP_369183080.1 hypothetical protein -
  AB2U05_RS10320 (AB2U05_10320) - 2473233..2473601 (-) 369 WP_045698408.1 helix-turn-helix domain-containing protein -
  AB2U05_RS10325 (AB2U05_10325) cinA 2473909..2474382 (-) 474 WP_045698444.1 CinA family protein Machinery gene
  AB2U05_RS10330 (AB2U05_10330) pgsA 2474429..2475067 (-) 639 WP_045698410.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB2U05_RS10335 (AB2U05_10335) rimO 2475064..2476569 (-) 1506 WP_045698412.1 30S ribosomal protein S12 methylthiotransferase RimO -
  AB2U05_RS10340 (AB2U05_10340) - 2476667..2477530 (-) 864 WP_045698414.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 15478.64 Da        Isoelectric Point: 6.8799

>NTDB_id=925679 AB2U05_RS10325 WP_045698444.1 2473909..2474382(-) (cinA) [Streptomyces sp. Y1]
MAERVHAALRAEGGTLAVAESLTGGLLAAALVDVPGASATFRGSVTAYATGLKASVLGVDEGLLDVYGPVHPLVAGQMAE
GVRRLLGADYGLATTGVAGPEPQDGQPVGTVHLAVAGPGGTLVRSPRLSGGRATIRHGAVTAALELLAGRLAQRDAG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=925679 AB2U05_RS10325 WP_045698444.1 2473909..2474382(-) (cinA) [Streptomyces sp. Y1]
CTGGCCGAGCGGGTGCACGCGGCGTTGCGCGCCGAGGGCGGCACGCTGGCCGTTGCCGAGTCGCTGACCGGCGGGCTGCT
CGCCGCCGCCCTGGTCGACGTCCCCGGGGCGTCCGCGACCTTCCGCGGCTCGGTCACCGCCTACGCGACCGGGCTGAAGG
CCTCGGTGCTCGGCGTGGACGAGGGCCTGCTGGACGTGTACGGGCCGGTGCACCCGCTGGTGGCCGGGCAGATGGCCGAG
GGCGTGCGCAGACTGCTGGGCGCCGACTACGGGCTCGCGACGACCGGGGTCGCCGGTCCGGAGCCGCAGGACGGACAGCC
GGTGGGCACCGTACACCTCGCGGTCGCCGGTCCGGGGGGAACTCTGGTCAGATCGCCCCGACTGTCCGGCGGGCGTGCCA
CAATCCGTCACGGAGCGGTGACCGCCGCACTGGAGCTGCTGGCCGGCCGGCTCGCACAGCGAGACGCCGGCTGA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(1-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

38.514

94.268

0.363