Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB2U05_RS03350 Genome accession   NZ_CP163445
Coordinates   820613..821629 (+) Length   338 a.a.
NCBI ID   WP_369182368.1    Uniprot ID   -
Organism   Streptomyces sp. Y1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 815613..826629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2U05_RS03335 (AB2U05_03335) - 817353..818171 (-) 819 WP_045708711.1 carbohydrate ABC transporter permease -
  AB2U05_RS03340 (AB2U05_03340) - 818171..819079 (-) 909 WP_369182366.1 carbohydrate ABC transporter permease -
  AB2U05_RS03345 (AB2U05_03345) - 819112..820383 (-) 1272 WP_369182367.1 ABC transporter substrate-binding protein -
  AB2U05_RS03350 (AB2U05_03350) cytR 820613..821629 (+) 1017 WP_369182368.1 LacI family DNA-binding transcriptional regulator Regulator
  AB2U05_RS03355 (AB2U05_03355) - 821756..823228 (-) 1473 WP_369182369.1 endo-1,4-beta-xylanase -
  AB2U05_RS03360 (AB2U05_03360) - 823768..825774 (+) 2007 WP_369182370.1 glycoside hydrolase family 6 protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36720.86 Da        Isoelectric Point: 6.6203

>NTDB_id=925666 AB2U05_RS03350 WP_369182368.1 820613..821629(+) (cytR) [Streptomyces sp. Y1]
MDRAATLAEIAQEAGVSAPTVSKVLNGRADVAPATRERVEELLHRYGYRRRRGNRQTSPLLELVFHELESAWAVEVIRGV
ENAVRDEGLSIVLSESAERHGPGQSWVDGVLARRPTGVVLVLSDLDRSLREQLARRDIPFVVLDPAGDPGQEVPAVGTTN
WDGGLAATRHLLDLGHRRIGLLGGPARMMCSRARADGYRAALDMAGIPYDPRLVREGDFHHESGRLLGLELLRLPERPTA
VFAGNDLQALGLYEAARELGLRIPEDLSVVGFDDLPLARWVGPPLTTVRQPLTEMAETATRLVIDLARGVRPGTLRVDLA
TSLVVRSSTAAPRAQPAA

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=925666 AB2U05_RS03350 WP_369182368.1 820613..821629(+) (cytR) [Streptomyces sp. Y1]
GTGGACAGAGCGGCCACGCTGGCCGAGATCGCGCAGGAGGCGGGGGTCTCCGCGCCGACTGTTTCGAAAGTCCTGAACGG
ACGCGCCGACGTCGCCCCGGCCACCCGGGAACGGGTGGAGGAACTGCTCCACCGGTACGGCTACCGGCGGCGGCGCGGCA
ACCGTCAGACGAGCCCGCTGCTGGAACTGGTCTTCCACGAGCTGGAGAGCGCCTGGGCGGTGGAGGTGATCCGCGGCGTC
GAGAACGCCGTCCGCGACGAGGGCCTGAGCATCGTGCTCTCCGAGTCCGCCGAACGGCACGGCCCCGGCCAGTCCTGGGT
AGACGGGGTGCTCGCCCGCCGCCCCACCGGCGTGGTGCTGGTGCTGTCCGACCTGGACCGCTCGCTGCGCGAGCAACTGG
CCCGCCGGGACATCCCCTTCGTGGTGCTGGACCCGGCCGGCGACCCCGGCCAGGAGGTGCCCGCCGTGGGCACCACCAAC
TGGGACGGCGGCCTCGCCGCGACCCGGCACCTGCTCGACCTCGGCCACCGCCGGATCGGCCTGCTCGGCGGCCCCGCGCG
GATGATGTGCAGCCGGGCCCGGGCCGACGGCTACCGCGCCGCGCTCGACATGGCGGGCATCCCGTACGACCCGCGACTGG
TCCGCGAGGGCGACTTCCACCACGAGTCCGGGCGCCTGCTCGGCCTGGAGCTGCTGCGTCTGCCGGAGCGGCCGACCGCC
GTCTTCGCCGGGAACGACCTCCAGGCGCTCGGCCTGTACGAGGCCGCCCGCGAGCTGGGGCTGCGCATCCCGGAGGACCT
CAGCGTGGTCGGCTTCGACGACCTGCCGCTGGCCCGCTGGGTCGGCCCGCCGCTGACCACCGTGCGCCAGCCGCTGACCG
AGATGGCCGAGACGGCGACCCGCCTGGTGATCGACCTGGCCCGCGGGGTGCGGCCCGGCACGCTGCGGGTGGACCTGGCC
ACCAGCCTGGTGGTGCGCAGCAGCACCGCCGCGCCGCGCGCGCAGCCGGCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.095

99.408

0.379
  cytR Vibrio parahaemolyticus RIMD 2210633

35.777

100

0.361