Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QMN04_RS01635 Genome accession   NZ_AP025531
Coordinates   345718..346536 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain OCU-Ac19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340718..351536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMN04_RS01600 - 341301..341430 (-) 130 Protein_305 hypothetical protein -
  QMN04_RS01605 (OCUAc19_03090) rpoZ 341469..341747 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QMN04_RS01610 (OCUAc19_03100) gmk 341820..342449 (-) 630 WP_000015937.1 guanylate kinase -
  QMN04_RS01615 (OCUAc19_03110) ispH 342572..343522 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QMN04_RS01620 (OCUAc19_03120) fimU 343692..344165 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  QMN04_RS01625 (OCUAc19_03130) pilV 344159..344719 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  QMN04_RS01630 (OCUAc19_03140) pilW 344720..345721 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  QMN04_RS01635 (OCUAc19_03150) pilX 345718..346536 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QMN04_RS01640 (OCUAc19_03160) pilY1 346548..350402 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  QMN04_RS01645 (OCUAc19_03170) pilY2 350415..350897 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  QMN04_RS01650 (OCUAc19_03180) pilE 350894..351319 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=92565 QMN04_RS01635 WP_000149374.1 345718..346536(+) (pilX) [Acinetobacter baumannii strain OCU-Ac19]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=92565 QMN04_RS01635 WP_000149374.1 345718..346536(+) (pilX) [Acinetobacter baumannii strain OCU-Ac19]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment