Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AB5J54_RS28400 Genome accession   NZ_CP163444
Coordinates   6079851..6082043 (+) Length   730 a.a.
NCBI ID   WP_369146749.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6074851..6087043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS28375 (AB5J54_28375) - 6075248..6075481 (-) 234 WP_017947604.1 Lrp/AsnC family transcriptional regulator -
  AB5J54_RS28380 (AB5J54_28380) - 6075715..6076677 (+) 963 WP_116158650.1 thiamine-phosphate kinase -
  AB5J54_RS28385 (AB5J54_28385) thiD 6076674..6077468 (+) 795 WP_369146747.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AB5J54_RS28390 (AB5J54_28390) rpmB 6077599..6077784 (-) 186 WP_003957616.1 50S ribosomal protein L28 -
  AB5J54_RS28395 (AB5J54_28395) - 6078058..6079791 (+) 1734 WP_369146748.1 DAK2 domain-containing protein -
  AB5J54_RS28400 (AB5J54_28400) recG 6079851..6082043 (+) 2193 WP_369146749.1 ATP-dependent DNA helicase RecG Machinery gene
  AB5J54_RS28405 (AB5J54_28405) rsmD 6082110..6082691 (+) 582 WP_369146750.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB5J54_RS28410 (AB5J54_28410) coaD 6082718..6083197 (+) 480 WP_369149479.1 pantetheine-phosphate adenylyltransferase -
  AB5J54_RS28415 (AB5J54_28415) - 6083320..6084357 (+) 1038 WP_369146751.1 ATP synthase F0 subunit B -
  AB5J54_RS28420 (AB5J54_28420) - 6084496..6085149 (+) 654 WP_369149481.1 DUF177 domain-containing protein -
  AB5J54_RS28425 (AB5J54_28425) rpmF 6085152..6085325 (+) 174 WP_015036448.1 50S ribosomal protein L32 -
  AB5J54_RS28430 (AB5J54_28430) rnc 6085345..6086139 (+) 795 WP_351189757.1 ribonuclease III -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 78841.32 Da        Isoelectric Point: 6.2863

>NTDB_id=925645 AB5J54_RS28400 WP_369146749.1 6079851..6082043(+) (recG) [Streptomyces sp. R44]
MGDVPALDEPLKKSLGPATAKVMAEALDLHTVGDLLHHYPRRYAERGELTTLSDLPLDEHVTVVAQVADARVHTFNGSKG
RGQRLEVTITDGSGRVQLVFFGKGVHKPHKDLLPGTRAMFAGKVSLFNRRLQLAHPSYELLRGESDEAVDTWAAALIPIY
PATAKLESWKIAKAVDAVLPSAGDAVDPLPPALREGRGLSELPDALRMIHRPRTKADIADARERLKWDEAFVLQVALARR
RHADTQLPAVARKPAPDGLLDAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDSGG
QAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAERATKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVR
FHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPH
FLARAWERVREEVGKGHQAYVVCPRIGDEEDQKKKAKASPEDEAEKRPPLAVLDVAEKLGAGPLAGLRIAVLHGRMHPDD
KDDVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEASPARQRLN
AVATTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEATALVLADPDLTAHPGLRTALDALLS
EEREEYLEKG

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=925645 AB5J54_RS28400 WP_369146749.1 6079851..6082043(+) (recG) [Streptomyces sp. R44]
ATGGGAGACGTGCCCGCGCTCGACGAACCACTCAAGAAGTCCCTCGGCCCCGCCACCGCCAAGGTCATGGCCGAGGCGCT
CGACCTGCACACGGTCGGGGACCTGCTCCACCACTACCCCCGCCGGTACGCCGAGCGCGGGGAGCTCACCACGCTCTCCG
ACCTGCCGCTCGACGAGCACGTCACGGTGGTCGCACAGGTCGCGGACGCCCGGGTGCACACCTTCAACGGCTCCAAGGGC
CGCGGCCAGCGCCTCGAAGTGACCATCACCGACGGCAGCGGCCGGGTGCAGCTGGTCTTCTTCGGCAAGGGCGTGCACAA
GCCGCACAAGGACCTGCTGCCCGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCGCTCTTCAACCGGCGCCTCCAGCTCG
CCCACCCGTCCTACGAGTTGCTCCGCGGCGAGAGCGACGAGGCCGTCGACACCTGGGCGGCCGCCCTCATCCCGATCTAC
CCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGCCAAGGCCGTCGACGCCGTCCTGCCCAGCGCCGGAGACGCCGTCGA
CCCGCTGCCGCCCGCCCTGCGCGAGGGCCGGGGCCTCAGCGAGCTGCCCGACGCCCTGCGGATGATCCACCGCCCCCGTA
CCAAGGCGGACATCGCCGACGCCCGCGAGCGGCTCAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCCCTCGCCCGCCGC
CGGCACGCCGACACCCAACTGCCCGCCGTCGCCCGGAAACCGGCCCCCGACGGCCTCCTCGACGCCTTCGACGCCAAGCT
GCCCTTCACCCTCACCGAGGGCCAGCAGAAGGTCTCGAAGGAGATCTTCGACGACCTGGCCACCGAGCACCCGATGCACC
GCCTCCTCCAGGGAGAGGTGGGCAGCGGCAAGACGATGGTGGCGCTGCGCGCCATGCTCGCCGTCGTCGACTCCGGCGGC
CAGGCCGCCATGCTCGCCCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCCGTCACCGAGATGATGGGCGAGCTCGC
CGAGGGAGGGATGCTCGGCGGCGCCGAGCGGGCCACCAAGGTCGTCCTGCTCACCGGCTCCATGGGCGCCGCCGCCCGCC
GCCAGGCCCTGCTCGACCTCGTCACCGGCGAGGCGGGCATCGTCATCGGCACGCACGCGCTGATCGAGGACAAGGTCCGG
TTCCACGACCTCGGCCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGAGTCGAGCAGCGCGACGCCCTCAGGGGCAAGGG
GAAGCAGCCGCCGCACCTCCTCGTCATGACCGCCACCCCCATCCCGCGCACGGTCGCCATGACCGTCTTCGGCGACCTGG
AGACCTCCGTCCTCGACCAGCTGCCCGCCGGCCGCTCGCCGATCGCCAGCCATGTCGTGCCCGCCGCCGACAAGCCGCAC
TTCCTCGCGCGCGCCTGGGAGCGGGTCCGCGAGGAGGTCGGGAAGGGACACCAGGCGTACGTCGTCTGCCCCCGCATCGG
CGACGAGGAGGACCAGAAGAAGAAGGCCAAGGCCTCCCCGGAGGACGAGGCCGAGAAGCGCCCGCCGCTCGCCGTCCTCG
ACGTCGCCGAGAAGCTCGGCGCCGGCCCTCTCGCGGGCCTGCGGATCGCCGTCCTGCACGGCCGTATGCACCCCGACGAC
AAGGACGACGTCATGCGCCGCTTCGCCGCAGGCGAGCTCGACGTCCTCGTCGCCACCACCGTCATCGAGGTCGGTGTCAA
CGTGCCCAACGCCACCGCCATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGCTCCACCAGCTCCGCGGCCGCG
TCGGCCGGGGCTCCGCCCCGGGCCTCTGCCTCCTCGTCAGCGAGATGCCCGAGGCCAGCCCCGCCCGGCAGCGGCTGAAC
GCCGTCGCCACCACCCTCGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGGCGTGAGGGCGACGTCCTCGGCCA
GGCCCAGTCCGGCGTCCGCTCCTCGCTGCGGGTGCTCGCCGTCATCGACGACGAGGAGGTCATCGCCGCCGCCCGCGAGG
AGGCCACCGCCCTCGTCCTCGCCGACCCCGACCTCACCGCCCACCCGGGCCTGCGCACCGCGCTCGACGCCCTCCTCAGC
GAGGAGCGGGAGGAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(292-445)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-141)

Helicase conserved C-terminal domain (Helicase_C)

(539-617)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(645-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.017

94.795

0.37