Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U6115_RS21715 Genome accession   NZ_CP142381
Coordinates   4542340..4543488 (+) Length   382 a.a.
NCBI ID   WP_043579571.1    Uniprot ID   A0A2R2IX26
Organism   Chromobacterium subtsugae strain ATCC 31532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4537340..4548488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6115_RS21665 (U6115_21665) rplK 4537940..4538371 (-) 432 WP_043575242.1 50S ribosomal protein L11 -
  U6115_RS21670 (U6115_21670) nusG 4538475..4539008 (-) 534 WP_043575240.1 transcription termination/antitermination protein NusG -
  U6115_RS21675 (U6115_21675) secE 4539008..4539364 (-) 357 WP_080509332.1 preprotein translocase subunit SecE -
  U6115_RS21685 (U6115_21685) tuf 4539514..4540704 (-) 1191 WP_101527486.1 elongation factor Tu -
  U6115_RS21705 (U6115_21705) - 4541190..4541441 (-) 252 WP_043579568.1 YfhL family 4Fe-4S dicluster ferredoxin -
  U6115_RS21710 (U6115_21710) rsmD 4541543..4542112 (-) 570 WP_043579569.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  U6115_RS21715 (U6115_21715) pilA 4542340..4543488 (+) 1149 WP_043579571.1 signal recognition particle-docking protein FtsY Machinery gene
  U6115_RS21720 (U6115_21720) ftsE 4543550..4544203 (+) 654 WP_043579573.1 cell division ATP-binding protein FtsE -
  U6115_RS21725 (U6115_21725) ftsX 4544200..4545108 (+) 909 WP_043579575.1 permease-like cell division protein FtsX -
  U6115_RS21730 (U6115_21730) rpoH 4545236..4546099 (+) 864 WP_043579577.1 RNA polymerase sigma factor RpoH -
  U6115_RS21735 (U6115_21735) - 4546299..4548086 (-) 1788 WP_043579580.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40252.45 Da        Isoelectric Point: 5.0571

>NTDB_id=925632 U6115_RS21715 WP_043579571.1 4542340..4543488(+) (pilA) [Chromobacterium subtsugae strain ATCC 31532]
MFSFFKKKPKPVETPQTETPAAVVDAAPALIAAPASPAAAALEAPAPAPAPDAVGDLPAETAAAVAPPASSEDAAPTPLK
KMSWTERLKAGLAKTRDRLGKQLAGLFGGGKIDEELYEELETVLLTADMGMDATVHLLKDVRERVSLKGLKDSSELKGAL
KDSLQDLIGPLEVPLDVEGKKPFVIMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNDVTV
IAQQGGDSAAVCYDAILAAIARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDANIGQNTVNQVK
AFDDALGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFIGVGESIDDLRPFDSRDYIDALFE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=925632 U6115_RS21715 WP_043579571.1 4542340..4543488(+) (pilA) [Chromobacterium subtsugae strain ATCC 31532]
ATGTTCAGCTTCTTCAAGAAAAAACCGAAGCCGGTGGAAACACCGCAAACCGAAACGCCGGCAGCCGTCGTCGATGCCGC
TCCGGCACTCATCGCCGCGCCCGCCAGTCCGGCCGCCGCCGCGCTTGAAGCGCCTGCTCCGGCGCCGGCCCCTGATGCCG
TCGGCGATCTGCCGGCCGAAACCGCCGCCGCGGTTGCCCCGCCGGCCTCGTCCGAAGACGCCGCGCCGACGCCGCTGAAG
AAAATGAGCTGGACCGAGCGGCTGAAGGCCGGCCTGGCCAAGACCCGCGACCGCCTGGGCAAGCAGCTGGCCGGCCTGTT
CGGCGGCGGCAAGATAGACGAAGAGCTGTACGAAGAGCTGGAAACGGTGCTGCTGACCGCCGACATGGGCATGGACGCCA
CCGTGCATCTGCTGAAGGACGTGCGCGAACGGGTATCGTTGAAGGGCCTGAAGGATTCTTCCGAACTCAAAGGCGCGCTT
AAGGATTCGCTGCAGGACCTGATCGGCCCGCTGGAAGTGCCGCTGGACGTCGAAGGCAAGAAGCCGTTCGTGATCATGAT
GACCGGCGTCAACGGCGCCGGCAAGACCACTTCCATCGGCAAGCTGGCCAAGTACTACCAAAGCCAGGGCAAGAGCGTGC
TCCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAACAGCTGATCGCCTGGGGCGAGCGCAACGACGTCACCGTG
ATCGCGCAGCAGGGCGGCGACTCCGCCGCCGTCTGCTATGACGCGATCCTGGCCGCCATCGCCCGCGGCATCGACATCGT
GCTGGCCGACACCGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAGGAAATCAAAAAGGTGAAGCGGGTGATCCAGA
AGGCATTGCCGGACGCGCCGCATGAAGTGGTGCTGGTGCTGGACGCCAATATCGGCCAGAACACCGTCAACCAAGTGAAA
GCCTTCGATGACGCGCTGGGCCTGACCGGCCTGATCCTGACCAAGCTGGACGGCACCGCCAAGGGAGGCGTGATCGCCGC
CATCGCCAAGCAGCGGCCGATCCCGCTGCGCTTCATCGGCGTCGGCGAAAGCATAGACGACCTGCGGCCGTTCGACAGCC
GCGACTACATCGACGCGCTGTTCGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(182-381)

SRP54-type protein, helical bundle domain (SRP54_N)

(99-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R2IX26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.962

100

0.678