Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U6115_RS07780 Genome accession   NZ_CP142381
Coordinates   1575777..1577180 (-) Length   467 a.a.
NCBI ID   WP_043574482.1    Uniprot ID   A0A2R2IYT2
Organism   Chromobacterium subtsugae strain ATCC 31532     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570777..1582180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6115_RS07750 (U6115_07750) - 1570874..1572340 (-) 1467 WP_043574469.1 NAD(P)H-hydrate dehydratase -
  U6115_RS07755 (U6115_07755) - 1572337..1572954 (-) 618 WP_043574472.1 flavin prenyltransferase UbiX -
  U6115_RS07760 (U6115_07760) rapZ 1573027..1573869 (-) 843 WP_043574474.1 RNase adapter RapZ -
  U6115_RS07765 (U6115_07765) hprK 1573850..1574806 (-) 957 WP_043574476.1 HPr(Ser) kinase/phosphatase -
  U6115_RS07770 (U6115_07770) ptsN 1574799..1575260 (-) 462 WP_043574478.1 PTS IIA-like nitrogen regulatory protein PtsN -
  U6115_RS07775 (U6115_07775) hpf 1575383..1575709 (-) 327 WP_043574480.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U6115_RS07780 (U6115_07780) rpoN/rpoN1 1575777..1577180 (-) 1404 WP_043574482.1 RNA polymerase factor sigma-54 Machinery gene
  U6115_RS07785 (U6115_07785) lptB 1577184..1577912 (-) 729 WP_080509337.1 LPS export ABC transporter ATP-binding protein -
  U6115_RS07790 (U6115_07790) lptA 1577915..1578469 (-) 555 WP_043574488.1 lipopolysaccharide transport periplasmic protein LptA -
  U6115_RS07795 (U6115_07795) lptC 1578459..1579028 (-) 570 WP_043574491.1 LPS export ABC transporter periplasmic protein LptC -
  U6115_RS07800 (U6115_07800) - 1579025..1579549 (-) 525 WP_043574493.1 KdsC family phosphatase -
  U6115_RS07805 (U6115_07805) - 1579596..1580576 (-) 981 WP_043574495.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51350.36 Da        Isoelectric Point: 4.9649

>NTDB_id=925622 U6115_RS07780 WP_043574482.1 1575777..1577180(-) (rpoN/rpoN1) [Chromobacterium subtsugae strain ATCC 31532]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQTEVERFLLDNPLLERGDEPRDAEAAPEGQDSRETAADEAPDSHDDG
AGGELLEWGAGSRQGGDDDYDPMLNVPCQVSLREHLLAQLGEIALAGRDLAIVRLLIEELDDDGYLPLSLDELASHLPLE
LELESDELAVGLKLLQQFDPAGVGARSLAESLQLQLQRLAADEAGRALALAIAREHLALLGGRDYAKLKKTLGCGDAELR
AAQALIARLNPHPATGFSHGDVHYVIPDISVRKRRGRWVAELNRSAMPRLRVNRLYERMLADSRGQAGEMAGRLQEARWL
VKNIQQRFDTILKVAEAIVDRQQSFFEHGEVAMRPLILRDIADELGLHESTVSRSTSQKYLLCPRGLFELKYFFGSALET
DSGGECSATAIKARIRGMIDSEDSGKPLSDSAIADALGKQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=925622 U6115_RS07780 WP_043574482.1 1575777..1577180(-) (rpoN/rpoN1) [Chromobacterium subtsugae strain ATCC 31532]
ATGAAACAGGCCCTTCAGCTCAAGGTATCGCAACAGCTGACGCTGACGCCGCAGCTGCAGCAATCGATCAAACTGCTGCA
GCTGTCCACGCTGGATCTGCAAACCGAGGTGGAACGCTTCCTGCTGGACAATCCGCTGCTGGAGCGCGGCGACGAGCCGC
GCGACGCCGAAGCCGCGCCCGAAGGCCAGGACAGCCGCGAAACCGCCGCCGACGAGGCACCGGACAGCCATGACGACGGC
GCCGGCGGCGAACTGCTGGAATGGGGCGCCGGCAGCCGCCAGGGCGGCGACGACGACTACGACCCCATGCTCAACGTGCC
GTGCCAGGTCAGCCTGCGCGAGCACCTGCTGGCGCAACTGGGCGAAATCGCGCTGGCCGGCCGCGATCTGGCCATCGTCC
GGCTGCTGATCGAAGAGCTGGACGACGACGGCTACCTGCCGCTCAGCCTGGACGAACTGGCCAGCCACCTGCCGCTGGAG
CTGGAGCTGGAAAGCGACGAGCTGGCGGTGGGCCTCAAGCTGCTGCAGCAATTCGATCCCGCCGGCGTCGGCGCGCGCTC
GCTGGCCGAATCGCTGCAGCTGCAACTGCAGCGGCTGGCCGCGGACGAAGCCGGCCGGGCGCTGGCGCTGGCCATCGCGC
GCGAGCACCTGGCGCTGCTGGGCGGCCGCGACTACGCCAAACTGAAGAAAACACTGGGCTGCGGCGACGCCGAGCTGCGC
GCCGCCCAGGCGCTGATCGCCCGCCTCAACCCCCACCCCGCCACCGGCTTCAGCCACGGCGACGTCCATTACGTGATTCC
GGACATCAGCGTGCGCAAGCGGCGCGGCCGCTGGGTCGCCGAACTGAACCGCTCCGCCATGCCCAGGCTGCGGGTCAACC
GCCTCTACGAGCGCATGCTGGCCGACAGCCGCGGCCAGGCGGGCGAAATGGCCGGCCGGCTGCAGGAGGCGCGCTGGCTG
GTGAAGAACATCCAGCAGCGATTTGACACCATCCTGAAAGTGGCGGAAGCTATCGTTGACAGGCAACAATCGTTCTTTGA
ACACGGCGAAGTGGCGATGCGGCCGCTGATCCTGCGCGACATCGCGGATGAGCTGGGCCTGCACGAATCCACGGTTTCCC
GCTCCACCAGCCAGAAATACCTGCTCTGCCCGCGCGGCCTGTTCGAGCTCAAGTATTTCTTCGGCAGCGCGCTGGAAACC
GATAGTGGAGGCGAGTGCTCCGCCACCGCCATCAAGGCTCGCATACGCGGCATGATAGACAGCGAGGACAGCGGCAAGCC
GCTGTCGGACAGCGCCATCGCCGATGCGTTAGGCAAGCAGGGAATTCAGGTTGCCAGACGCACCGTAGCCAAGTATCGTG
AAGCCATGCAGATTCCGGCGGTGAATCTGCGCAAGGCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(109-296)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(312-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R2IYT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.495

100

0.563