Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5J54_RS10360 Genome accession   NZ_CP163444
Coordinates   2229753..2232797 (-) Length   1014 a.a.
NCBI ID   WP_369143621.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2224753..2237797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS10335 (AB5J54_10335) - 2225656..2226408 (+) 753 WP_369143615.1 SDR family NAD(P)-dependent oxidoreductase -
  AB5J54_RS10340 (AB5J54_10340) - 2226654..2227400 (-) 747 WP_369143616.1 hypothetical protein -
  AB5J54_RS10345 (AB5J54_10345) - 2227397..2227993 (-) 597 WP_369143618.1 papain-like cysteine protease family protein -
  AB5J54_RS10350 (AB5J54_10350) - 2228230..2229159 (+) 930 WP_369143619.1 hypothetical protein -
  AB5J54_RS10355 (AB5J54_10355) - 2229163..2229588 (-) 426 WP_369143620.1 Rieske (2Fe-2S) protein -
  AB5J54_RS10360 (AB5J54_10360) uvrA 2229753..2232797 (-) 3045 WP_369143621.1 excinuclease ABC subunit UvrA Machinery gene
  AB5J54_RS10365 (AB5J54_10365) - 2232954..2233643 (+) 690 WP_369143622.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  AB5J54_RS10370 (AB5J54_10370) - 2233679..2234335 (+) 657 WP_369143623.1 MBL fold metallo-hydrolase -
  AB5J54_RS10375 (AB5J54_10375) - 2234465..2235751 (+) 1287 WP_369143624.1 MFS transporter -
  AB5J54_RS10380 (AB5J54_10380) - 2235825..2236826 (-) 1002 WP_369143625.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 1014 a.a.        Molecular weight: 111087.43 Da        Isoelectric Point: 8.1077

>NTDB_id=925601 AB5J54_RS10360 WP_369143621.1 2229753..2232797(-) (uvrA) [Streptomyces sp. R44]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECRRPISRQSPQAIVDKVLELPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGVTIQLSEPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
AEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRLIGGLSQALGFRTDIPYAGLPQRAKKALMHGHKTQVEVRYRNRYGRERAYTTPAFEGAVSFVKRRHTEAESDSSR
ERFEGYMREVPCPTCEGSRLKPIVLAVTVMDRSIAEVSAMSISDCAEFLSRLTLNARDKKIAERVLKEVNERLRFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLANKESMTGQYLSGRKAIATPDIRRPADPGRALTVHGARENNLRDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDELVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGDRYNRETLEVHYKGKSIAEVLNMPIEE
ALDFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLIKVL
SNLVDKGNSVIVIEHNLDVIKTADWVIDMGPEGGSGGGLVVAEGTPEEVASVPASHTGKFLREILGAERISDAAGTIPAA
RGSKKAAAKKPAAKTVAAKAPAKKTATKAVAPAKKAATATKAAAKKATTRTRKA

Nucleotide


Download         Length: 3045 bp        

>NTDB_id=925601 AB5J54_RS10360 WP_369143621.1 2229753..2232797(-) (uvrA) [Streptomyces sp. R44]
GTGGCCGACCGTCTCATCGTCCGTGGCGCTCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTCCCGCGTGACTCCCT
CATCGTCTTCACCGGGCTCTCGGGGTCGGGCAAGTCCTCCCTCGCGTTCGACACGATCTTCGCCGAGGGGCAGCGCCGGT
ACGTCGAGTCGCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAAGGTCTG
TCGCCCGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACGGAGGTCTACGA
CTACCTCCGCCTGCTCTTCGCCCGCATCGGCAAGCCGCACTGTCCCGAGTGCCGCCGCCCCATCTCCCGCCAGTCGCCGC
AGGCCATCGTCGACAAGGTCCTGGAGCTCCCCGAGGGCAGCCGCTTCCAGGTGCTCTCCCCGCTCGTGCGCGAGCGGAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTGCAGACGAAGGGCTACAGCCGCGCCCGCGTGGACGGCGTGACCATCCAGCT
GAGCGAACCTCCGACGCTGAAGAAGCAGGAGAAGCACACGATCGAGGTGGTCGTCGACCGCCTCACCGTGAAGGACAGCG
CCAAGCGCCGGCTCACCGACTCCGTCGAGACCGCGCTGGGACTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
GCCGAGGACGACCCCGAGCGCGAGCGGATGTACTCGGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGCACCCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCCGACGAGGAGAAGTCCCTCGACGAGGGCGCCATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGCCGGCTCATCGGCGGACTCTCCCAGGCCCTCGGCTTCCGCACGGACATCCCGTACGCCGGGCTGCCGCA
GCGCGCCAAGAAGGCCCTGATGCACGGCCACAAGACCCAGGTCGAGGTCCGCTACCGGAACCGGTACGGCCGCGAGCGGG
CGTACACCACCCCGGCCTTCGAGGGCGCCGTCTCCTTCGTCAAGCGGCGCCACACCGAGGCCGAGAGCGACTCCAGCCGC
GAGCGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGCGAGGGCTCCCGCCTCAAGCCGATCGTCCTCGCGGT
CACGGTCATGGACCGGTCCATCGCCGAGGTCTCCGCGATGTCGATCAGCGACTGCGCCGAGTTCCTCTCCCGCCTCACGC
TCAACGCCCGTGACAAGAAGATCGCCGAGCGGGTCCTCAAGGAGGTCAACGAGCGGCTGCGCTTCCTCGTCGACGTCGGC
CTGGACTACCTCTCGCTCAACCGGGCGGCCGGCACGCTCTCCGGCGGCGAGGCCCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGCCTGGTCGGCGTGCTCTACGTGCTCGACGAGCCGTCCATCGGCCTCCACCAGCGCGACAACCACCGGCTCA
TCGAGACCCTGGTCCGGCTCCGGGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCC
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGCGAGCACGGCGGCAAGGTCGTCCACTCCGGCTCCCTGAAGGAGCTCCT
CGCCAACAAGGAGTCGATGACCGGGCAGTACCTGTCCGGCCGCAAGGCGATCGCCACCCCGGACATCCGCCGCCCGGCGG
ACCCCGGACGTGCGCTCACCGTGCACGGCGCCCGCGAGAACAACCTGCGGGACATCGACGTCTCCTTCCCGCTGGGCGTC
CTCACCGCCGTCACCGGCGTCTCCGGCTCCGGCAAGTCGACCCTGGTCAACGACATCCTCTACACCCACCTGGCGCGCGA
GCTGAACGGCGCCAAGTCGGTGCCCGGACGGCACACGCGCGTGGACGGCGACGAGCTAGTCGACAAGGTCGTGCACGTCG
ACCAGTCCCCGATCGGCCGCACCCCGCGGTCGAACCCGGCGACGTACACCGGCGTCTTCGACCACGTCCGCAAGCTCTTC
GCCGAGACGATGGAGGCCAAGGTCCGGGGCTACCTGCCCGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTCCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGCG
ACCGGTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTCCTGAACATGCCGATCGAGGAG
GCCCTCGACTTCTTCGAGGCCGTCCCGACGATCGCCCGGCACCTGCGCACGCTCAACGAGGTCGGACTCGGCTACGTCCG
CCTCGGGCAGTCCGCGCCGACGCTCTCCGGCGGCGAGGCGCAGCGCGTGAAGCTCGCCTCCGAGCTCCAGAAGCGCTCGA
CGGGCCGCACCGTGTACGTCCTCGACGAGCCGACCACCGGTCTCCACTTCGAGGACATCTCGAAGCTGATCAAGGTCCTG
TCCAACCTGGTCGACAAGGGGAACTCGGTGATCGTCATCGAGCACAACCTCGATGTCATCAAGACCGCGGACTGGGTCAT
CGACATGGGCCCGGAGGGCGGCAGCGGCGGCGGTCTGGTCGTCGCCGAGGGCACGCCCGAGGAGGTCGCCTCGGTCCCGG
CGAGCCACACCGGCAAGTTCCTCCGCGAGATCCTCGGCGCCGAGCGGATCAGCGACGCCGCGGGGACGATCCCGGCGGCC
CGCGGTTCGAAGAAGGCGGCGGCGAAGAAGCCGGCGGCGAAGACGGTGGCGGCGAAGGCCCCCGCCAAGAAGACCGCGAC
CAAGGCGGTGGCCCCCGCGAAGAAGGCCGCCACGGCCACCAAGGCCGCCGCGAAGAAGGCGACGACCCGCACCCGCAAGG
CGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(629-865)

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.554

93.294

0.528
  uvrA Streptococcus pneumoniae TIGR4

56.554

93.294

0.528
  uvrA Streptococcus pneumoniae D39

56.554

93.294

0.528