Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VQ058_RS04755 Genome accession   NZ_CP142378
Coordinates   1045872..1047671 (-) Length   599 a.a.
NCBI ID   WP_034531822.1    Uniprot ID   A0AAC8WCB7
Organism   Apilactobacillus kunkeei strain GYUN-333     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040872..1052671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ058_RS04725 - 1041214..1041726 (-) 513 WP_034531812.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  VQ058_RS04730 - 1041742..1042593 (-) 852 WP_034531814.1 methyltransferase domain-containing protein -
  VQ058_RS04735 - 1042688..1043575 (-) 888 WP_034531816.1 RluA family pseudouridine synthase -
  VQ058_RS04740 - 1043568..1044377 (-) 810 WP_034531818.1 NAD kinase -
  VQ058_RS04745 - 1044380..1045012 (-) 633 WP_034531820.1 GTP pyrophosphokinase family protein -
  VQ058_RS04750 - 1045147..1045833 (+) 687 WP_140999893.1 DsbA family protein -
  VQ058_RS04755 pepF 1045872..1047671 (-) 1800 WP_034531822.1 oligoendopeptidase F Regulator
  VQ058_RS04760 - 1047710..1048792 (-) 1083 WP_158520138.1 competence protein CoiA -
  VQ058_RS04765 - 1048857..1049918 (-) 1062 WP_051961097.1 adaptor protein MecA -
  VQ058_RS04770 - 1049979..1050740 (-) 762 WP_326865007.1 MBL fold metallo-hydrolase -
  VQ058_RS04775 - 1050832..1051284 (+) 453 WP_054450251.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68975.94 Da        Isoelectric Point: 4.6196

>NTDB_id=925580 VQ058_RS04755 WP_034531822.1 1045872..1047671(-) (pepF) [Apilactobacillus kunkeei strain GYUN-333]
MSEVQQLPKRSEVPEKLTWDLTTIYKTDDDFEADFKECAKEVAAVEKLKNDHFDAKTLLSDLKAIEKLERKVEKLYVYSS
LKSDADTSNSEYQSMNARCADLASKASSALAWFEPAVLNISEDDLKKMLSEESELADYTHYFDELFSQKDHILDAEHEKI
LSSLGNIFDTPSNVYGVMTNSDLKFPVVSDEDGNKVELSNGVYSKLLESTDRSVRKEAFQQLYTVYNQFKNTLSSTLSGE
VKVHNFRASMRHFSSAKEAALSNNHIDEKVYQQLIDTVNKYLPLLHRYVKLRKKLLSLDEMHMYDLYTPLFGNSPISYNF
DEAKEESIKALSILGDDYIDHIKEEFNNRWIDVVENKGKRSGAYSSGVYDTNPYILLNWQDNLDNLFTLVHESGHSMHSY
YTTHNQPFQYGDYSIFLAEIASTTNENILTDYLLKNTDDVEVKKYVLNHFLDGFKGTIFRQTQFAEFEDFAHQQEQAGNP
LTAKMLSDFYYKLNQRYYGDGVVSDPEIAYEWARIPHFYMNYYVYQYATGFAAAIDLSDGICAHDQEAIDKYIGYLKSGS
SDYPLNVMKKAGIDMTNADYLENAFKVFEERLNELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=925580 VQ058_RS04755 WP_034531822.1 1045872..1047671(-) (pepF) [Apilactobacillus kunkeei strain GYUN-333]
ATGAGTGAAGTACAACAATTACCAAAGAGATCAGAAGTACCAGAAAAATTAACCTGGGATTTAACAACCATTTATAAGAC
GGATGATGATTTTGAAGCGGATTTCAAAGAATGTGCCAAAGAAGTCGCAGCTGTTGAAAAGTTAAAGAATGATCATTTTG
ATGCCAAAACACTTTTAAGTGACTTAAAAGCAATCGAAAAACTAGAACGTAAAGTTGAAAAATTATATGTATATTCATCA
TTGAAGAGTGATGCTGATACATCAAATTCAGAATACCAAAGCATGAATGCAAGATGTGCCGATTTAGCATCTAAAGCATC
ATCAGCACTAGCATGGTTTGAACCAGCGGTTTTAAACATCAGTGAAGATGATCTAAAGAAGATGCTATCTGAAGAATCAG
AATTAGCAGATTACACACACTACTTTGATGAATTATTCAGCCAAAAGGATCATATCCTAGATGCTGAACACGAAAAAATT
CTATCAAGTTTAGGTAATATCTTTGATACACCTTCAAACGTCTATGGCGTGATGACCAATTCTGACCTGAAGTTCCCAGT
TGTATCAGACGAAGATGGTAACAAGGTCGAACTATCTAATGGGGTCTACAGTAAGTTACTTGAATCCACAGACAGAAGTG
TTCGTAAGGAAGCATTCCAACAGTTATACACAGTTTATAACCAATTCAAGAACACTTTATCATCAACACTTTCTGGTGAA
GTGAAGGTGCATAACTTTAGAGCTTCAATGCGTCACTTTAGCTCAGCTAAGGAAGCTGCATTGAGCAATAATCACATCGA
TGAAAAGGTATACCAACAATTAATTGATACTGTTAATAAGTACCTACCTTTATTACATCGTTACGTTAAACTAAGAAAGA
AATTACTTTCTTTAGATGAAATGCACATGTATGACTTGTACACACCTTTATTCGGTAATTCACCAATCTCATACAACTTT
GATGAAGCCAAGGAAGAATCAATTAAGGCATTATCAATTCTTGGGGATGATTACATTGATCACATCAAGGAAGAATTTAA
CAATCGTTGGATTGATGTAGTTGAAAACAAGGGAAAGAGAAGTGGGGCATACTCATCAGGAGTATACGACACTAATCCAT
ACATTCTTTTAAACTGGCAAGATAACCTTGATAACTTGTTTACACTGGTTCACGAATCAGGTCACAGTATGCACAGTTAC
TACACAACCCATAATCAACCATTCCAATATGGTGATTACTCAATCTTCTTAGCCGAAATCGCATCAACAACTAACGAAAA
TATCTTAACTGATTATCTTTTGAAGAATACCGATGATGTTGAAGTTAAGAAGTACGTATTAAATCACTTCCTAGATGGTT
TCAAAGGAACCATTTTCAGACAAACTCAATTTGCTGAATTTGAAGACTTTGCCCACCAACAAGAACAAGCGGGCAATCCA
CTAACAGCTAAGATGCTAAGTGATTTCTACTACAAGCTAAACCAACGTTACTACGGTGATGGAGTCGTATCTGATCCAGA
AATTGCATACGAATGGGCCAGAATTCCGCACTTCTACATGAATTACTATGTATATCAATACGCAACTGGTTTTGCAGCCG
CCATTGATTTATCAGATGGCATCTGTGCCCATGACCAAGAAGCGATTGATAAATACATCGGCTACCTAAAATCAGGTAGT
TCTGATTATCCATTGAACGTGATGAAAAAAGCTGGTATCGACATGACTAATGCCGATTACCTAGAAAATGCATTCAAGGT
CTTTGAAGAAAGATTAAATGAATTGGAATCATTAATTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-586)

Oligopeptidase F (Peptidase_M3_N)

(118-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

98.664

0.503