Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5J53_RS42795 Genome accession   NZ_CP163443
Coordinates   9419053..9421407 (-) Length   784 a.a.
NCBI ID   WP_369250969.1    Uniprot ID   -
Organism   Streptomyces sp. R41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9414053..9426407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J53_RS42775 (AB5J53_42780) - 9414291..9416240 (+) 1950 WP_369250965.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  AB5J53_RS42780 (AB5J53_42785) - 9416237..9416986 (+) 750 WP_369250966.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  AB5J53_RS42785 (AB5J53_42790) - 9417315..9418085 (+) 771 WP_369250967.1 GNAT family N-acetyltransferase -
  AB5J53_RS42790 (AB5J53_42795) - 9418085..9419056 (+) 972 WP_369250968.1 lysophospholipid acyltransferase family protein -
  AB5J53_RS42795 (AB5J53_42800) uvrA 9419053..9421407 (-) 2355 WP_369250969.1 ATP-binding cassette domain-containing protein Machinery gene
  AB5J53_RS42800 (AB5J53_42805) - 9421474..9422517 (-) 1044 WP_369250970.1 LLM class flavin-dependent oxidoreductase -
  AB5J53_RS42805 (AB5J53_42810) - 9422695..9424032 (-) 1338 WP_369250971.1 DUF3500 domain-containing protein -
  AB5J53_RS42810 (AB5J53_42815) - 9424198..9425703 (-) 1506 WP_369250972.1 ATP-binding protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 83879.88 Da        Isoelectric Point: 6.7236

>NTDB_id=925574 AB5J53_RS42795 WP_369250969.1 9419053..9421407(-) (uvrA) [Streptomyces sp. R41]
MPSPHGPHDSYVRVRGAREHNLQGVDVDIPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPK
VGEITGLPPAVSLQQRRSSPTSRSSVGTVTNLSNSLRMLFSRAGDYPEGAERLDSDAFSPNTTAGACPECHGLGQVHRTT
EELLVPDPALSIRAGAIAAWPGAWQGKNLRDILDTLGYDVDRPWRELPAEEREWILFTDEQPVVTVHPVRDAERIQRPYQ
GTYMSARRYVMKTFSDTKSPTLRAKAERFLTSAPCPLCGGSRLRPEALAVTFAGRNIAELAASPLAELARMPHGTTEAAR
VLTDDLTSRIAPVVELGLGYLSLDRAAPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEASLTVLERLKSA
GNSVFVVEHHLDVVRGADWLVDVGPRAGEHGGRVLHSGPVAELAAVEESATARFLFDRSPAPVREVRSPGGQLKIGPVTR
HNLRGVTAEFPLGVFTAVTGVSGSGKSTLIGEVTEDLTGVGRLVSVDQKPIGRTPRSNLATYTGLFDVVRKVFAATDEAR
RRGYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNPETLEVTYRGRNIAQVLDLTVEAAARFFAE
TDTPAVARSLTTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRTRRGHTLYLLDEPTTGLHPADVEVLMRQLHGLVD
AGHTVVVVEHDMTVVAGADWVIDLGPGGGDAGGRIVAAGPPGEVARAQGSTTAPYLARALPEAP

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=925574 AB5J53_RS42795 WP_369250969.1 9419053..9421407(-) (uvrA) [Streptomyces sp. R41]
ATGCCCAGCCCCCACGGCCCCCACGACTCGTACGTCCGCGTCCGGGGAGCCCGTGAGCACAACCTCCAGGGCGTGGACGT
CGACATCCCGCGTGACGTCCTCGCGGTCTTCACCGGCGTCTCCGGCTCCGGAAAGTCCTCGCTGGCCTTCGGGACGATCT
ACGCGGAGGCGCAGCGGCGCTACTTCGAGTCGGTCGCCCCGTACGCGCGGCGGCTGATCCACCAAGTAGGGGCGCCGAAG
GTCGGGGAGATCACCGGGCTGCCGCCCGCGGTCTCGCTTCAGCAGCGCCGCTCGTCGCCGACCTCGCGCTCGTCCGTCGG
GACGGTCACCAATCTCTCCAACTCACTGCGGATGCTGTTCTCGCGGGCGGGCGACTATCCCGAGGGCGCCGAGCGGCTGG
ACTCGGACGCGTTCTCGCCCAATACGACGGCCGGGGCCTGCCCCGAGTGCCATGGGCTCGGCCAAGTGCACCGTACGACG
GAGGAGTTGCTGGTACCGGATCCGGCGCTGTCGATCCGTGCGGGGGCGATCGCCGCGTGGCCGGGTGCCTGGCAGGGCAA
GAACCTGCGGGACATCCTCGACACGCTCGGGTACGACGTGGACCGGCCCTGGCGCGAGCTGCCCGCCGAGGAACGGGAGT
GGATCCTCTTCACGGACGAGCAGCCGGTGGTCACCGTGCATCCGGTGCGAGACGCCGAGCGGATCCAACGCCCTTACCAG
GGCACGTACATGAGTGCACGGCGCTATGTCATGAAGACCTTCTCCGACACGAAGAGCCCGACGCTCCGGGCCAAGGCCGA
GCGGTTTCTCACCAGCGCTCCCTGTCCGCTGTGCGGCGGCAGCCGGCTGCGTCCGGAGGCGCTGGCGGTGACGTTCGCGG
GACGGAACATCGCTGAGCTGGCCGCGTCGCCGTTGGCGGAGCTGGCCCGTATGCCGCACGGGACTACCGAGGCCGCCCGG
GTGCTCACCGACGATCTCACGTCCCGTATCGCGCCCGTCGTCGAGCTCGGCCTCGGCTATCTCAGCCTGGACCGGGCGGC
CCCGACGCTCTCCGCGGGCGAACTCCAACGGCTGCGCCTGGCAACGCAGCTGCGCTCCGGGCTCTTCGGGGTCGTGTACG
TGCTGGACGAGCCGTCCGCCGGACTGCACCCGGCGGACACGGAGGCCTCGCTCACGGTCCTGGAGCGGCTGAAGTCGGCG
GGGAACTCGGTGTTCGTCGTCGAGCACCATCTCGATGTCGTGCGCGGCGCCGACTGGCTCGTCGACGTCGGGCCGCGCGC
CGGGGAGCACGGCGGGCGGGTACTGCACAGTGGTCCGGTGGCGGAGCTGGCCGCGGTCGAGGAGTCGGCCACGGCACGCT
TCCTCTTCGACCGCTCCCCCGCTCCGGTACGCGAAGTCCGGTCGCCGGGCGGTCAGTTGAAGATCGGGCCGGTCACCCGG
CACAACCTGCGCGGGGTCACCGCCGAGTTCCCGCTCGGTGTGTTCACCGCGGTGACCGGCGTCTCCGGCTCCGGCAAGTC
CACACTGATCGGCGAGGTGACGGAGGACCTGACGGGTGTCGGACGGCTCGTCTCCGTCGACCAGAAGCCCATCGGCCGTA
CCCCGCGCTCGAACCTGGCGACGTACACCGGGCTCTTCGACGTCGTGCGCAAGGTCTTCGCCGCGACGGACGAGGCGCGG
CGGCGCGGCTACGGCGTCGGACGATTCTCCTTCAACGTCGCCGGCGGTCGCTGCGAGACCTGTCAAGGTGAGGGATTCGT
CAGCGTGGAGCTGCTGTTCCTGCCCAGCACCTATGCGCCGTGCCCGGACTGCGGCGGGGCGCGCTACAACCCCGAGACGC
TCGAAGTGACGTACCGGGGACGGAACATCGCGCAGGTCCTGGACCTGACGGTGGAGGCGGCGGCGCGGTTCTTCGCCGAG
ACGGACACCCCGGCCGTCGCGCGTAGCCTCACCACGCTCCTCGACGTGGGCCTCGGCTATCTGCGACTCGGCCAGCCCGC
CACGGAGTTGTCCGGCGGCGAGGCACAACGCATCAAGCTGGCCAGCGAGTTGCAGCGGACACGCCGCGGGCACACCCTCT
ATCTGCTCGACGAGCCGACGACGGGGCTGCACCCGGCCGATGTCGAGGTGCTGATGCGCCAGCTGCACGGTCTGGTCGAC
GCCGGCCACACCGTCGTGGTCGTCGAGCACGACATGACCGTCGTCGCGGGCGCCGACTGGGTGATCGACCTGGGCCCGGG
CGGCGGCGACGCGGGCGGGCGGATCGTCGCGGCGGGACCTCCGGGCGAGGTGGCGCGGGCGCAGGGCAGCACGACGGCCC
CGTATCTCGCCCGCGCGCTCCCTGAGGCCCCCTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(162-268)

ABC transporter (ABC_tran)

(483-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.69

87.245

0.372
  uvrA Streptococcus pneumoniae TIGR4

42.69

87.245

0.372
  uvrA Streptococcus pneumoniae D39

42.69

87.245

0.372