Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VQ058_RS01790 Genome accession   NZ_CP142378
Coordinates   456125..457501 (+) Length   458 a.a.
NCBI ID   WP_326866226.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain GYUN-333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 451125..462501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ058_RS01765 - 451519..452472 (+) 954 WP_034531882.1 DMT family transporter -
  VQ058_RS01770 - 452487..453155 (+) 669 WP_034535343.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  VQ058_RS01775 - 453191..454531 (-) 1341 WP_034534708.1 aminopeptidase C -
  VQ058_RS01780 rpiA 454638..455327 (-) 690 WP_034531888.1 ribose-5-phosphate isomerase RpiA -
  VQ058_RS01785 - 455561..456097 (+) 537 WP_034531890.1 dUTP diphosphatase -
  VQ058_RS01790 radA 456125..457501 (+) 1377 WP_326866226.1 DNA repair protein RadA Machinery gene
  VQ058_RS01795 - 457523..458614 (+) 1092 WP_034534705.1 PIN/TRAM domain-containing protein -
  VQ058_RS01800 gltX 458724..460214 (+) 1491 WP_034531895.1 glutamate--tRNA ligase -
  VQ058_RS01805 cysS 460335..461741 (+) 1407 WP_034531896.1 cysteine--tRNA ligase -
  VQ058_RS01810 - 461742..462164 (+) 423 WP_034534704.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49781.00 Da        Isoelectric Point: 6.4050

>NTDB_id=925568 VQ058_RS01790 WP_326866226.1 456125..457501(+) (radA) [Apilactobacillus kunkeei strain GYUN-333]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSTHRMDFNGQQTKPQLIKDVKFEKESRFETESQE
FNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISGQLGAKDQRVLYVSGEESASQIKLRAERLSVNGSNMYLYPETDMGAI
KSAIDEIKPDAVVIDSVQTISEPEVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGSIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLREVANPSEVFLEERLKDANGSAIVVSIEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRVGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNRGTDPSECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLIPKHNMSGWTAPDGIEVVGVSTLAQAIKIALN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=925568 VQ058_RS01790 WP_326866226.1 456125..457501(+) (radA) [Apilactobacillus kunkeei strain GYUN-333]
GTGGCTAAAGTAAAGACCCAATTTGTTTGCGAAGAATGTGGATACATTTCACCAAAGTACTTGGGACATTGTCCTAACTG
TGGAAAATGGAATACATTTGAAGAACAAACCGTTCAAAAAGAAACATCTAGCTTGAAATCGACTCACCGAATGGATTTCA
ATGGTCAGCAAACAAAACCACAACTAATCAAAGACGTTAAGTTTGAAAAGGAATCACGTTTTGAAACTGAGTCCCAAGAA
TTTAACCGTGTATTAGGTGGCGGAATTGTTCCGGGCTCATTAATTTTAATTGGTGGAGATCCTGGTATCGGGAAATCCAC
ACTGTTACTTCAAATTTCTGGCCAATTAGGTGCTAAGGACCAACGCGTCTTATATGTATCTGGGGAAGAAAGTGCCAGTC
AAATTAAGCTCAGAGCGGAACGTTTATCAGTGAATGGCTCCAACATGTATCTATATCCAGAAACCGATATGGGTGCCATC
AAGTCTGCCATTGATGAGATTAAGCCAGATGCAGTCGTAATTGATTCTGTTCAAACGATTTCTGAGCCAGAAGTGGATTC
CGCAATTGGTTCCGTATCACAGGTAAGAGCAATTACCGCAGATTTAATGTCCATTGCAAAGACCAATGGAATTACAATCT
TTGTGGTTGGCCACGTTACTAAGGGTGGCTCAATTGCCGGACCTAAGACTTTGGAACACATGGTTGATACTGTTTTATAC
TTTGAAGGAGACATGCATCATTCCTACCGTATCTTAAGAGCCGTGAAGAACCGTTTTGGTTCAACCGACGAGTTAGGAAT
TTTTGACATGCAAGAATCCGGATTACGAGAGGTTGCTAATCCATCAGAGGTCTTCTTGGAAGAACGTCTGAAGGACGCCA
ATGGTTCTGCAATCGTTGTCTCAATCGAAGGAACCAGACCCATCCTAGTCGAAATTCAGGCATTGGTAACACCATCCGTA
TTCGGGAACGCCCAAAGAACCGCTACCGGGATTGACCGTAACCGTGTAGCAGTTTTAATGGCGGTGCTTGAAAAACGTGT
CGGACTAATGCTACAAAACCAAGATGCCTTCTTAAAGGCTGCTGGTGGAGTTAAGTTGAACGAACCAGCAATTGATTTGG
CTGTAGCCATTAGTGTGGCATCAAGTTACAAGAACAGGGGAACCGACCCTAGTGAATGTTATATCGGTGAAATTGGTTTA
ACTGGTGAAATTAGACGAGTTAACCGCATTGAACAACGTGTTTTAGAAGCACAAAAGCTGGGCTTTAAGCGCGTATTGAT
ACCAAAACATAATATGTCAGGATGGACTGCTCCAGACGGAATTGAAGTCGTTGGTGTATCCACACTGGCTCAAGCGATTA
AAATCGCACTTAACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

62.996

99.127

0.624
  radA Streptococcus pneumoniae Rx1

62.996

99.127

0.624
  radA Streptococcus pneumoniae D39

62.996

99.127

0.624
  radA Streptococcus mitis NCTC 12261

62.996

99.127

0.624
  radA Streptococcus pneumoniae TIGR4

62.996

99.127

0.624
  radA Streptococcus mitis SK321

62.996

99.127

0.624
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

99.782

0.618