Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   VQZ30_RS09710 Genome accession   NZ_CP142375
Coordinates   2009994..2013146 (+) Length   1050 a.a.
NCBI ID   WP_190380387.1    Uniprot ID   -
Organism   Microcystis aeruginosa 1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2004994..2018146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQZ30_RS09690 (VQZ30_09690) - 2005216..2007489 (-) 2274 WP_190380389.1 hypothetical protein -
  VQZ30_RS09695 (VQZ30_09695) - 2007486..2008427 (-) 942 WP_190380388.1 homogentisate phytyltransferase -
  VQZ30_RS09705 (VQZ30_09705) - 2009225..2009887 (-) 663 WP_045360557.1 class I SAM-dependent methyltransferase -
  VQZ30_RS09710 (VQZ30_09710) pilL-C 2009994..2013146 (+) 3153 WP_190380387.1 hybrid sensor histidine kinase/response regulator Machinery gene
  VQZ30_RS09715 (VQZ30_09715) - 2013261..2013419 (+) 159 WP_190357825.1 hypothetical protein -
  VQZ30_RS09720 (VQZ30_09720) - 2013364..2013576 (+) 213 WP_072024875.1 hypothetical protein -
  VQZ30_RS09725 (VQZ30_09725) - 2013569..2013682 (+) 114 Protein_1922 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
  VQZ30_RS09730 (VQZ30_09730) - 2013870..2014646 (-) 777 WP_045360646.1 hypothetical protein -
  VQZ30_RS09735 (VQZ30_09735) - 2014676..2015590 (-) 915 WP_045360561.1 DNA adenine methylase -
  VQZ30_RS09740 (VQZ30_09740) - 2015809..2016324 (-) 516 WP_045360563.1 alpha/beta hydrolase -
  VQZ30_RS09745 (VQZ30_09745) - 2016492..2016881 (-) 390 WP_004158794.1 hypothetical protein -
  VQZ30_RS09750 (VQZ30_09750) - 2017048..2018010 (-) 963 WP_012265170.1 orange carotenoid-binding protein -

Sequence

Protein


Download         Length: 1050 a.a.        Molecular weight: 115753.86 Da        Isoelectric Point: 4.6738

>NTDB_id=925532 VQZ30_RS09710 WP_190380387.1 2009994..2013146(+) (pilL-C) [Microcystis aeruginosa 1339]
MMKPDSDHLFNEDLEQLLESLEDKDSDGEEALDELSFLFEQSSSPAARSGASLGQTPSSLPSERELRELFGGSINWEEAA
TNDLYFTRRPAPKSEAEDGDDLESRLLENAAVRDSEAIITISNPNFYDSLEDLEAFLEKPTPRAQSPLPDIFESLEALLS
ESTAVEREAGAEHLQRLESLELATESHPENKFKDLEKLLKESSQVMGGVPASSFSPPARLNNGRPLVSKAFEQTMRVPIK
QLDNLSNLIGELVVKRNCLEQEQKDLGLFLDNLLNQVQKLSDVGSWLQDLYERTLLEGALLASRNSRGAIGYGRVKGENQ
GDSAMTGKQDALDLDQFDNDFHKKAQNIIELIVRVRESASDLQFVVDETDQVMRSLRQVTTQLQEGMTKSRMAPFSETAD
HLPRAIHDLSLELHKQAKLKVEGGDVLIDQMLLEHLLSPMTHLVNNAIAHGIESPQERMAKGKPALGTISVQAFLQGNQT
VITVSDDGAGIDANRVKRKAIKKGLISDREAQHLSPQEVYELLFRPGFSTKDQADGISGRGVGLDVVRTSVIDVRGTVTI
DSVLGKGTTFTIRLPLTLSICKALFCVSDRARIGFSRDEVEEVLLPKSLEVKVGKVEEVKEVKMSFYQPRDIQMDMDGRR
CVFWQNTLLPFQPLSELLSYNRRVGRGSFYTGKQEEDSFSIVILRGGNNLLAVQVDQVIMSEDRFRSSLPEIVIKQIEGP
IPKTVGIAGATVLGDGTVMPIGDVLELIDIAQGRLRTDKGSPWRQPAPPVEVGTGQKSETMVLIVDDSITVRELLSLTFS
KAGYRVEQARDGQEAWEKLRGGLPCDIVFSDIEMPRLNGLELLSNLQKDPRLAAIPVAFLTSRGADLHRKEAAKLGASGY
FTKPCPDRDLLSAAEKMIAGEVLLADSIKAARNQPLSSPLVLIVDDSVIMREMLTISFVKAGYRIEQARDGLEAWEKLRA
GLACDLILCDIEMPRLNGLELLSCLQEDEQLQGIPVAMVTAQGAQKMQHLAAAKGAKGFFVKPYIESVLLSAAQRLIAGE
VLIQKESLVD

Nucleotide


Download         Length: 3153 bp        

>NTDB_id=925532 VQZ30_RS09710 WP_190380387.1 2009994..2013146(+) (pilL-C) [Microcystis aeruginosa 1339]
ATGATGAAACCCGACTCGGATCATCTCTTTAACGAAGATCTCGAACAGTTGTTAGAGAGTTTAGAAGACAAAGACAGCGA
CGGTGAGGAGGCTCTAGACGAACTCAGCTTTTTATTTGAGCAGAGTTCCTCTCCGGCAGCCAGGTCTGGGGCTTCTCTTG
GCCAAACCCCGTCTTCCTTGCCCTCAGAACGGGAATTACGGGAACTTTTTGGCGGTAGCATCAATTGGGAAGAAGCCGCC
ACTAATGATCTTTATTTTACCCGTAGGCCTGCGCCAAAGTCAGAAGCAGAAGATGGGGATGATCTGGAATCTCGGCTGTT
AGAAAATGCAGCAGTCCGGGACTCAGAAGCAATTATAACCATCAGCAACCCCAATTTTTACGACAGCCTTGAAGACTTAG
AAGCTTTTCTGGAAAAACCCACTCCACGAGCGCAATCGCCACTGCCAGACATCTTTGAATCCCTAGAAGCCCTCCTCTCG
GAATCCACGGCAGTGGAACGGGAGGCTGGGGCGGAACATCTCCAACGGTTAGAATCACTGGAACTTGCCACAGAAAGCCA
CCCAGAGAATAAATTCAAGGATTTAGAAAAACTCCTCAAAGAAAGCAGTCAGGTGATGGGAGGAGTTCCGGCCTCCAGTT
TCAGTCCACCAGCACGGTTAAATAACGGGCGTCCCCTTGTCAGTAAAGCTTTTGAACAGACGATGCGGGTGCCGATCAAA
CAATTGGATAACCTCAGCAATCTGATCGGGGAACTGGTGGTTAAACGCAATTGCCTTGAACAGGAACAGAAGGACCTGGG
TCTCTTTTTGGATAATTTGCTTAACCAAGTCCAAAAACTCAGCGATGTGGGCAGTTGGCTGCAGGATCTCTATGAAAGAA
CCCTCCTAGAAGGGGCTTTGCTGGCTAGTCGCAATTCCCGCGGTGCCATCGGTTACGGTAGAGTTAAGGGAGAAAATCAG
GGCGATTCGGCTATGACCGGCAAACAAGATGCCCTAGATCTCGACCAGTTTGATAATGATTTCCATAAAAAAGCGCAAAA
TATAATCGAATTGATCGTGCGAGTGCGAGAATCGGCCTCTGATCTTCAATTTGTCGTCGATGAAACCGATCAGGTGATGC
GTAGTCTGCGACAGGTTACCACCCAACTACAGGAAGGGATGACCAAATCCCGCATGGCTCCCTTTAGTGAAACTGCCGAT
CACCTACCCCGGGCAATTCACGATCTGTCCCTGGAACTGCATAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCT
CATCGATCAGATGCTCCTTGAACATCTCCTTAGTCCCATGACCCATCTGGTCAACAATGCGATCGCCCACGGCATTGAAT
CACCCCAAGAACGCATGGCTAAGGGGAAACCTGCCCTCGGTACGATCTCTGTCCAGGCATTCCTACAGGGAAATCAAACC
GTGATCACCGTTAGTGATGATGGGGCCGGTATTGATGCGAATCGGGTTAAACGCAAGGCGATCAAAAAAGGACTAATCAG
CGATCGGGAAGCTCAACACCTCAGTCCCCAAGAAGTCTATGAACTCCTCTTTCGCCCCGGTTTTAGTACCAAAGATCAGG
CCGATGGTATTTCCGGTCGTGGGGTGGGTTTAGATGTGGTGCGTACCAGTGTAATCGATGTGCGCGGGACCGTTACTATT
GACTCGGTACTGGGCAAAGGAACCACTTTTACCATCCGTTTACCCCTAACCCTGAGTATCTGTAAGGCCCTCTTTTGTGT
TAGTGATCGTGCGCGCATCGGTTTCTCCAGGGACGAAGTGGAAGAAGTCCTCCTCCCCAAAAGCCTGGAGGTCAAGGTGG
GAAAGGTGGAAGAGGTGAAAGAGGTGAAGATGAGCTTTTACCAGCCCAGGGATATCCAAATGGATATGGATGGACGGCGC
TGCGTTTTCTGGCAAAATACTTTACTACCTTTCCAACCCCTGAGCGAGTTGCTTTCCTACAATCGGCGGGTCGGTCGCGG
TAGTTTTTACACCGGCAAACAGGAGGAAGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATAATCTCTTGGCAGTGC
AGGTAGATCAAGTGATCATGTCAGAGGACCGATTCCGAAGCTCGCTACCGGAAATCGTCATCAAACAGATCGAAGGACCG
ATTCCGAAAACGGTTGGGATTGCTGGGGCGACGGTTTTAGGCGATGGTACGGTGATGCCCATCGGCGATGTGTTAGAGTT
AATCGACATTGCCCAGGGTCGTCTGCGTACCGATAAGGGGAGTCCTTGGCGCCAACCAGCCCCCCCCGTAGAGGTGGGAA
CTGGCCAAAAATCCGAGACTATGGTGCTGATTGTCGATGATTCGATTACTGTCCGGGAATTGCTCTCTTTAACCTTTAGT
AAAGCCGGTTATCGTGTGGAACAGGCCCGGGATGGTCAAGAAGCTTGGGAAAAATTACGCGGCGGTTTGCCCTGTGATAT
CGTTTTCTCCGATATCGAGATGCCCCGCCTGAATGGCCTGGAATTACTGTCTAATTTGCAAAAAGACCCCCGATTAGCGG
CGATTCCCGTGGCTTTCTTGACTTCCCGAGGAGCGGACCTTCATCGCAAGGAGGCGGCGAAATTAGGAGCTAGTGGTTAT
TTTACCAAGCCCTGCCCGGACAGAGATTTACTCTCGGCAGCTGAAAAAATGATTGCGGGGGAAGTGTTACTAGCTGATAG
TATTAAAGCGGCTCGTAATCAGCCTTTATCCTCTCCTCTGGTCTTGATTGTCGATGATTCGGTAATAATGCGAGAAATGT
TAACGATTTCTTTTGTTAAAGCTGGTTATCGCATTGAACAGGCCCGGGACGGTTTAGAAGCATGGGAAAAATTACGGGCC
GGATTAGCTTGTGATCTGATTCTCTGCGATATCGAAATGCCGCGCCTGAATGGGTTAGAATTGCTCTCTTGTCTGCAAGA
GGATGAACAACTTCAGGGGATACCAGTAGCGATGGTTACCGCGCAAGGGGCGCAAAAAATGCAGCATCTCGCCGCTGCTA
AAGGGGCAAAAGGTTTTTTTGTCAAGCCCTATATTGAGAGTGTTTTACTGTCGGCAGCCCAACGTTTGATCGCTGGTGAG
GTATTAATCCAAAAAGAAAGTCTTGTAGATTAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(628-749)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(233-388)

Response regulator receiver domain (Response_reg)

(782-894)

Response regulator receiver domain (Response_reg)

(921-1032)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(440-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

60.613

87.048

0.528