Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J53_RS16530 Genome accession   NZ_CP163443
Coordinates   3551113..3553041 (+) Length   642 a.a.
NCBI ID   WP_369246417.1    Uniprot ID   -
Organism   Streptomyces sp. R41     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546113..3558041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J53_RS16515 (AB5J53_16515) - 3547336..3547641 (+) 306 WP_369246414.1 YtxH domain-containing protein -
  AB5J53_RS16520 (AB5J53_16520) - 3547737..3549191 (+) 1455 WP_369246415.1 FGGY family carbohydrate kinase -
  AB5J53_RS16525 (AB5J53_16525) rcrP 3549380..3551113 (+) 1734 WP_369246416.1 ABC transporter ATP-binding protein Regulator
  AB5J53_RS16530 (AB5J53_16530) rcrQ 3551113..3553041 (+) 1929 WP_369246417.1 ABC transporter ATP-binding protein Regulator
  AB5J53_RS16535 (AB5J53_16535) - 3553175..3554479 (-) 1305 WP_369246418.1 RNA polymerase sigma factor -
  AB5J53_RS16540 (AB5J53_16540) dnaG 3554668..3556569 (-) 1902 WP_369246419.1 DNA primase -
  AB5J53_RS16545 (AB5J53_16545) - 3556616..3557881 (-) 1266 WP_369246420.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69401.88 Da        Isoelectric Point: 5.5834

>NTDB_id=925512 AB5J53_RS16530 WP_369246417.1 3551113..3553041(+) (rcrQ) [Streptomyces sp. R41]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLLAQFKPERATMYVMLLAVVLSVGLSVVGPKILGKATDLVFAGIIGRQMPSGA
TKAEVLESMRERGEGGMADMLSGTDFTPGKGIDFNAVGEVLGLAVVVFVLAGLLMAVATRLVNRAVNKTVYRLREDIQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIVGVLAMMFWVSPLLALVALVTVPLSFYVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPLPSARPDEMRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIATMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEVEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAANGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=925512 AB5J53_RS16530 WP_369246417.1 3551113..3553041(+) (rcrQ) [Streptomyces sp. R41]
ATGGCGGGGCCGATGGGGCGGATGATGGCCGGGGGCGGTCCCGATCAGCGCTCGATGGATTTCAAGGGGTCCGGCAAACG
GCTCCTCGCACAGTTCAAGCCTGAGCGCGCCACGATGTACGTGATGCTGCTCGCCGTCGTGCTGAGCGTGGGGCTCTCGG
TGGTCGGACCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGTCCGGCGCC
ACCAAGGCCGAAGTGCTCGAGTCCATGCGGGAGCGTGGCGAGGGCGGCATGGCCGACATGCTCTCGGGGACGGACTTCAC
ACCGGGCAAGGGCATCGACTTCAACGCGGTCGGCGAGGTGCTCGGGCTCGCGGTCGTGGTCTTCGTGCTGGCCGGACTGC
TGATGGCGGTGGCGACCCGGCTGGTGAACCGGGCGGTCAACAAGACCGTGTACCGGCTGCGCGAGGACATCCAGGCGAAG
CTGTCGCGGCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGGGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTCATCAACTCCCTGCTGACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTCTCCCCGCTGCTCGCGCTCGTGGCGCTGGTGACGGTCCCGCTCTCCTTCTACGTCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTATGTGCTGGTTGCG
GTGGTCGGCGGACTGCGCGTCGCGTCCGGCTCGCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGCATCTTCGAAC
TCCTCGACGCGGACGAGCAGGAGGCCGACCCGCTGCCGAGCGCCCGTCCCGACGAAATGCGCGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGGTACGACCCCGAGAAGCCGCTGATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACCGTGGC
GATCGTCGGCCCCACGGGCGCCGGCAAGACGACACTGGTGAACCTCCTGATGCGGTTCTACGAGGTCACCGGCGGGCGCA
TCGCACTCGACGGGGTCGACATCGCGACCATGTCCCGGGACGAGCTCCGGGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGTGGCACGATCGCCGAGAACATCGCGTACGGGGCCTCGCGGGACGTCACGCGCGGGGAGGTCGAGGAGGC
GGCGCGGGCCGCTCACGCGGACCGGTTCATCCGCACGCTTCCCGACGGGTACGACACCGTGATCGACGACGAGGGGACCG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACGATCGCTCGGGCGTTCCTGTCCGATCCGGTGATCCTCGTTCTCGACGAG
GCGACGAGTTCGGTGGACACGCGTACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCATGGGCGGACGTCGTT
CGTCATCGCGCACCGTCTGTCGACGATTCGCGACGCCGACACCATCCTCGTGATGGAGAACGGTTCGATCGTGGAGCAGG
GCGCACACACCGACCTGCTCGCGGCGAACGGAGCCTACGCCCGCCTGTACCAGGCCCAGTTCGCCCAGGCGGTCGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.452

96.573

0.4