Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J53_RS16525 Genome accession   NZ_CP163443
Coordinates   3549380..3551113 (+) Length   577 a.a.
NCBI ID   WP_369246416.1    Uniprot ID   -
Organism   Streptomyces sp. R41     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3544380..3556113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J53_RS16490 (AB5J53_16490) - 3545005..3545778 (+) 774 WP_369246412.1 SDR family NAD(P)-dependent oxidoreductase -
  AB5J53_RS16495 (AB5J53_16495) - 3545791..3546699 (-) 909 WP_369246413.1 alpha/beta-hydrolase family protein -
  AB5J53_RS16515 (AB5J53_16515) - 3547336..3547641 (+) 306 WP_369246414.1 YtxH domain-containing protein -
  AB5J53_RS16520 (AB5J53_16520) - 3547737..3549191 (+) 1455 WP_369246415.1 FGGY family carbohydrate kinase -
  AB5J53_RS16525 (AB5J53_16525) rcrP 3549380..3551113 (+) 1734 WP_369246416.1 ABC transporter ATP-binding protein Regulator
  AB5J53_RS16530 (AB5J53_16530) rcrQ 3551113..3553041 (+) 1929 WP_369246417.1 ABC transporter ATP-binding protein Regulator
  AB5J53_RS16535 (AB5J53_16535) - 3553175..3554479 (-) 1305 WP_369246418.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62479.63 Da        Isoelectric Point: 6.3222

>NTDB_id=925511 AB5J53_RS16525 WP_369246416.1 3549380..3551113(+) (rcrP) [Streptomyces sp. R41]
MLIRLLRTYLSPYKKPISLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISLAQVVCNTGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LVAVVPVLGISVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRGANTELTEVSLGTGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLATDSSVVP
PTAPVLELRRHGHLEIRGGGFRYPGAEEPVLKAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVKALENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925511 AB5J53_RS16525 WP_369246416.1 3549380..3551113(+) (rcrP) [Streptomyces sp. R41]
GTGCTCATACGACTCCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCTCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACTTGCCCACTCTGAACGCGCACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGTCCTTCGGCGCCGTGATGATCGGAATTTCGCTGGCGCAGGTGGTCTGCAACACCGGGGCCGTCTACTACGGCGCC
CGTACGGCGTCCGCGGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCGCGTGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTCGTCGCCGTGGTGCCGGTCCTCGGCATCTCCGTGACCCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGTGCCTTCGTGCGCGACG
ACTACGAGAAGGACCGCTTCCGGGGCGCGAACACCGAGCTGACCGAGGTGTCCCTCGGTACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGCCACGGACAGCAGCGTGGTGCCT
CCCACCGCGCCCGTCCTGGAGCTGCGGCGCCACGGCCACCTGGAGATCCGCGGGGGCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAAGGCCATCGACCTGGTGGCGCGGCCCGGCGAGGTGACCGCCGTGATCGGGTCCACCGGCAGCGGCA
AGTCGACGCTGCTCGGGCTGGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCCAAGCTGCTGGCCAGGACGGTCGGCCTCGTCCCGCAGAAGCCCTACCTCTTCGCGGGCACGGTGGCCAC
GAACCTGCGGTACGGCAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGAAGGCTCTCGAAAACGGCCTGGACTCGCCGATCTCCCAGGGCGGTACGAATGTGTCGGGCGGTCAGCGCCAGCGCCTG
GCCATCGCCCGCACCCTCGTACAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCACTGCGGGCGGCGCTCGCCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGGCGCCACCACGAGCTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.898

100

0.392