Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB5J52_RS39945 Genome accession   NZ_CP163441
Coordinates   8940751..8941770 (+) Length   339 a.a.
NCBI ID   WP_369226797.1    Uniprot ID   -
Organism   Streptomyces sp. R39     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8935751..8946770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J52_RS39920 (AB5J52_39920) - 8936189..8936761 (+) 573 WP_369226794.1 TetR/AcrR family transcriptional regulator -
  AB5J52_RS39925 (AB5J52_39925) - 8936829..8937812 (+) 984 WP_369226795.1 zinc-dependent alcohol dehydrogenase family protein -
  AB5J52_RS39930 (AB5J52_39930) - 8937881..8938027 (+) 147 Protein_7894 IS30 family transposase -
  AB5J52_RS39935 (AB5J52_39935) - 8938005..8938346 (-) 342 WP_369228322.1 ATP-binding protein -
  AB5J52_RS39940 (AB5J52_39940) - 8938649..8939728 (-) 1080 WP_369226796.1 hypothetical protein -
  AB5J52_RS39945 (AB5J52_39945) cytR 8940751..8941770 (+) 1020 WP_369226797.1 LacI family DNA-binding transcriptional regulator Regulator
  AB5J52_RS39950 (AB5J52_39950) - 8941993..8943264 (+) 1272 WP_369226798.1 extracellular solute-binding protein -
  AB5J52_RS39955 (AB5J52_39955) - 8943274..8944233 (+) 960 WP_369226799.1 carbohydrate ABC transporter permease -
  AB5J52_RS39960 (AB5J52_39960) - 8944235..8945128 (+) 894 WP_369226800.1 carbohydrate ABC transporter permease -
  AB5J52_RS39965 (AB5J52_39965) - 8945135..8946208 (+) 1074 WP_362746270.1 glycosidase -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 35437.12 Da        Isoelectric Point: 5.0817

>NTDB_id=925474 AB5J52_RS39945 WP_369226797.1 8940751..8941770(+) (cytR) [Streptomyces sp. R39]
MARRPTIADVAKLAGVSRATVSFVLNNRPGVAADTQERVRSAAEELGWTPSSSARALSTGRVRAVGLVLAREPELIGTDP
FFPAFMAGIETVISETGDGLMLQMSRPENEVETYRRLAADHRVDGVFLTDLRAGDPRPALVAELGLPAVAVGVPDSGAGL
PSVSLDDRPAVRAAVHHLAGLGHRDIAYVAGPEEFVHARRRRQAWSDALTEAGLPEGTLLPGGFTAEGGARATRLLLQRP
TPPTAIVYGNDLSATAGMAVAQDAGLRLPEDLSVVGFDDVPLASYTSPPLTTCRANPVSWGRASAQALVELIETGTTADV
ELEPAALVVRGSTGPAPVR

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=925474 AB5J52_RS39945 WP_369226797.1 8940751..8941770(+) (cytR) [Streptomyces sp. R39]
ATGGCTCGACGTCCCACGATCGCCGACGTGGCGAAACTGGCCGGGGTCTCCCGCGCGACCGTTTCCTTCGTCCTCAACAA
CCGTCCCGGCGTGGCCGCGGACACCCAGGAGCGCGTCCGGTCCGCGGCCGAGGAGCTGGGCTGGACGCCGAGTTCCAGCG
CCCGGGCGCTGTCCACGGGCCGGGTCCGCGCGGTCGGACTGGTCCTGGCACGTGAGCCCGAGCTCATCGGCACCGACCCG
TTCTTCCCCGCCTTCATGGCGGGCATCGAGACGGTCATATCGGAGACCGGTGACGGTCTGATGCTGCAGATGAGCCGCCC
CGAGAACGAGGTGGAAACCTACCGCAGGCTCGCCGCCGACCATCGCGTGGACGGCGTGTTCCTCACCGACCTGCGGGCCG
GCGACCCCCGTCCGGCGCTGGTCGCCGAGCTGGGCCTGCCGGCCGTCGCCGTGGGGGTGCCGGATTCCGGTGCCGGCCTG
CCGTCCGTCAGTCTCGACGACCGTCCCGCCGTCCGTGCGGCCGTACACCACCTGGCCGGCCTGGGACACCGCGACATCGC
CTACGTGGCCGGCCCCGAGGAGTTCGTGCACGCCCGGCGCCGTCGCCAGGCCTGGAGCGACGCCCTCACCGAGGCGGGGC
TGCCCGAGGGGACGTTACTGCCGGGCGGCTTCACCGCCGAGGGCGGAGCGCGGGCCACCCGGTTGCTGCTGCAGCGGCCC
ACGCCGCCGACGGCCATCGTCTACGGCAACGACCTCTCGGCCACGGCCGGGATGGCGGTCGCCCAGGACGCCGGACTGCG
GCTGCCCGAGGACCTGTCCGTGGTCGGCTTCGACGACGTACCGCTCGCCTCCTACACCAGCCCCCCGCTGACCACCTGCC
GCGCCAACCCCGTCTCCTGGGGCCGGGCCTCCGCGCAGGCGCTGGTGGAACTGATCGAGACCGGCACCACCGCCGACGTG
GAGCTGGAGCCCGCCGCCCTGGTGGTGCGCGGCTCCACCGGCCCCGCGCCGGTCCGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-333)

Bacterial regulatory proteins, lacI family (LacI)

(6-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.152

100

0.366
  cytR Vibrio parahaemolyticus RIMD 2210633

36.07

100

0.363