Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VKP34_RS08680 Genome accession   NZ_CP142358
Coordinates   1731549..1732262 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726549..1737262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS08670 (VKP34_08670) treC 1727618..1729246 (-) 1629 WP_021733072.1 alpha,alpha-phosphotrehalase -
  VKP34_RS08675 (VKP34_08675) treP 1729314..1731338 (-) 2025 WP_136069584.1 PTS system trehalose-specific EIIBC component -
  VKP34_RS08680 (VKP34_08680) treR 1731549..1732262 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  VKP34_RS08685 (VKP34_08685) - 1732542..1732880 (-) 339 Protein_1658 winged helix-turn-helix transcriptional regulator -
  VKP34_RS08690 (VKP34_08690) - 1733066..1733923 (+) 858 WP_136112096.1 VOC family protein -
  VKP34_RS08695 (VKP34_08695) yaaA 1733965..1734696 (+) 732 WP_136112097.1 peroxide stress protein YaaA -
  VKP34_RS08700 (VKP34_08700) nrdG 1734870..1735484 (-) 615 WP_136112098.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  VKP34_RS08705 (VKP34_08705) - 1735484..1735993 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  VKP34_RS08710 (VKP34_08710) - 1736002..1736937 (-) 936 WP_002992828.1 Gfo/Idh/MocA family protein -
  VKP34_RS08715 (VKP34_08715) - 1736966..1737112 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=925454 VKP34_RS08680 WP_002992823.1 1731549..1732262(+) (treR) [Streptococcus pyogenes strain 6702-99]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=925454 VKP34_RS08680 WP_002992823.1 1731549..1732262(+) (treR) [Streptococcus pyogenes strain 6702-99]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675