Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   R8565_RS06635 Genome accession   NZ_AP028330
Coordinates   1279141..1280109 (+) Length   322 a.a.
NCBI ID   WP_209392743.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10089     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1274141..1285109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8565_RS06610 (B10089_13020) cdsA 1275050..1275775 (-) 726 WP_002884177.1 phosphatidate cytidylyltransferase -
  R8565_RS06615 (B10089_13030) - 1275784..1276122 (-) 339 WP_002875268.1 hypothetical protein -
  R8565_RS06620 (B10089_13040) - 1276124..1277431 (-) 1308 WP_070296836.1 NFACT RNA binding domain-containing protein -
  R8565_RS06625 (B10089_13050) mobA 1277494..1278069 (+) 576 WP_002853737.1 molybdenum cofactor guanylyltransferase -
  R8565_RS06630 (B10089_13060) pldA 1278066..1279055 (+) 990 WP_107702133.1 phospholipase A -
  R8565_RS06635 (B10089_13070) ceuB 1279141..1280109 (+) 969 WP_209392743.1 ABC transporter permease Machinery gene
  R8565_RS06640 (B10089_13080) ceuC 1280102..1281040 (+) 939 WP_209392744.1 iron chelate uptake ABC transporter family permease subunit -
  R8565_RS06645 (B10089_13090) ceuD 1281037..1281792 (+) 756 WP_209392745.1 ABC transporter ATP-binding protein -
  R8565_RS06650 (B10089_13100) ceuB 1281805..1282797 (+) 993 WP_038816949.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8565_RS06655 (B10089_13110) - 1282952..1283173 (+) 222 WP_002856036.1 hypothetical protein -
  R8565_RS06660 (B10089_13120) - 1283174..1283455 (+) 282 WP_002856297.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R8565_RS06670 (B10089_13130) - 1283815..1284369 (-) 555 WP_002867306.1 membrane protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35423.37 Da        Isoelectric Point: 9.6678

>NTDB_id=92545 R8565_RS06635 WP_209392743.1 1279141..1280109(+) (ceuB) [Campylobacter jejuni strain BCH-10089]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=92545 R8565_RS06635 WP_209392743.1 1279141..1280109(+) (ceuB) [Campylobacter jejuni strain BCH-10089]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTTACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATTCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains


Predicted by InterProScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994


Multiple sequence alignment