Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VKP34_RS01365 Genome accession   NZ_CP142358
Coordinates   256167..257237 (+) Length   356 a.a.
NCBI ID   WP_136112280.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 251167..262237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS01350 (VKP34_01350) amiA 251695..253665 (+) 1971 WP_111676126.1 peptide ABC transporter substrate-binding protein Regulator
  VKP34_RS01355 (VKP34_01355) amiC 253730..255232 (+) 1503 WP_002992227.1 ABC transporter permease Regulator
  VKP34_RS01360 (VKP34_01360) amiD 255232..256158 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  VKP34_RS01365 (VKP34_01365) amiE 256167..257237 (+) 1071 WP_136112280.1 ABC transporter ATP-binding protein Regulator
  VKP34_RS01370 (VKP34_01370) amiF 257230..258153 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  VKP34_RS09100 - 258191..258280 (-) 90 WP_411976877.1 IS3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39662.70 Da        Isoelectric Point: 5.4774

>NTDB_id=925418 VKP34_RS01365 WP_136112280.1 256167..257237(+) (amiE) [Streptococcus pyogenes strain 6702-99]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGILESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSNAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=925418 VKP34_RS01365 WP_136112280.1 256167..257237(+) (amiE) [Streptococcus pyogenes strain 6702-99]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATATTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTAATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772
  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761
  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761
  oppD Streptococcus mutans UA159

56.677

94.663

0.537