Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VKP34_RS01115 Genome accession   NZ_CP142358
Coordinates   200019..201380 (+) Length   453 a.a.
NCBI ID   WP_136112270.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 195019..206380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS01100 (VKP34_01100) - 196713..198497 (+) 1785 WP_326658253.1 ABC transporter ATP-binding protein -
  VKP34_RS01105 (VKP34_01105) - 198615..199382 (+) 768 WP_002986113.1 epoxyqueuosine reductase QueH -
  VKP34_RS01110 (VKP34_01110) - 199492..199938 (+) 447 WP_002986111.1 dUTP diphosphatase -
  VKP34_RS01115 (VKP34_01115) radA 200019..201380 (+) 1362 WP_136112270.1 DNA repair protein RadA Machinery gene
  VKP34_RS01120 (VKP34_01120) - 201569..202084 (+) 516 WP_136112271.1 beta-class carbonic anhydrase -
  VKP34_RS01125 (VKP34_01125) - 202197..202907 (+) 711 WP_021733127.1 TIGR00266 family protein -
  VKP34_RS01130 (VKP34_01130) gltX 203089..204534 (+) 1446 WP_002993289.1 glutamate--tRNA ligase -
  VKP34_RS01135 (VKP34_01135) - 204929..206275 (+) 1347 WP_136112272.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49414.73 Da        Isoelectric Point: 6.0972

>NTDB_id=925413 VKP34_RS01115 WP_136112270.1 200019..201380(+) (radA) [Streptococcus pyogenes strain 6702-99]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGIKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=925413 VKP34_RS01115 WP_136112270.1 200019..201380(+) (radA) [Streptococcus pyogenes strain 6702-99]
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCGGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGAGATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATCGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA
AAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTATCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGATTTACCAAGGTCTATGCTCCTAAAAATGCCTT
GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(56-218)

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

85.43

100

0.854
  radA Streptococcus pneumoniae D39

85.21

100

0.852
  radA Streptococcus pneumoniae R6

85.21

100

0.852
  radA Streptococcus pneumoniae Rx1

85.21

100

0.852
  radA Streptococcus mitis SK321

85.21

100

0.852
  radA Streptococcus pneumoniae TIGR4

85.21

100

0.852
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611