Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AB5J50_RS35455 Genome accession   NZ_CP163440
Coordinates   7812785..7814998 (+) Length   737 a.a.
NCBI ID   WP_369262554.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7807785..7819998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS35450 (AB5J50_35450) - 7810782..7812617 (-) 1836 WP_369262553.1 HSP90 family protein -
  AB5J50_RS35455 (AB5J50_35455) recG 7812785..7814998 (+) 2214 WP_369262554.1 ATP-dependent DNA helicase RecG Machinery gene
  AB5J50_RS35460 (AB5J50_35460) rsmD 7815138..7815725 (+) 588 WP_369262556.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB5J50_RS35465 (AB5J50_35465) coaD 7815722..7816231 (+) 510 WP_330307547.1 pantetheine-phosphate adenylyltransferase -
  AB5J50_RS35470 (AB5J50_35470) - 7816331..7817410 (+) 1080 WP_369262559.1 ATP synthase F0 subunit B -
  AB5J50_RS35475 (AB5J50_35475) - 7817600..7818253 (+) 654 WP_369262560.1 DUF177 domain-containing protein -
  AB5J50_RS35480 (AB5J50_35480) rpmF 7818256..7818429 (+) 174 WP_006139588.1 50S ribosomal protein L32 -
  AB5J50_RS35485 (AB5J50_35485) rnc 7818449..7819306 (+) 858 WP_369262561.1 ribonuclease III -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 80015.53 Da        Isoelectric Point: 6.1972

>NTDB_id=925375 AB5J50_RS35455 WP_369262554.1 7812785..7814998(+) (recG) [Streptomyces sp. R35]
MDLVPVLEEPLKKALGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSRA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKDLLPGTRAMFSGKVSVFNHRLQLAHPAYELLRGDSDEAAESVDSWAG
ALIPIYPATAKLESWKIAKSVQTVLPSAQEAVDPLPDSLRDGRGLVALPEALLKIHRPHTKADIHDARARLKWDEAFVLQ
VALARRRHADAQLPAVARTPKPDGLLTAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLA
VVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEHSTKVVLLTGSMGAAARRQALLDLVTGESGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVP
AADKPHFLTRAWERVREEVENGHQAYVVCPRIGDEEDDPKKTKKKSPEDEAEKRPPLAVLDVAEQLAKGPLQGLKVEVLH
GRMQPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEMAEAS
PARQRLTAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEIIAEAREEAAAVVAADPDLERLPGLRT
ALDALLDEEREQYLEKG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=925375 AB5J50_RS35455 WP_369262554.1 7812785..7814998(+) (recG) [Streptomyces sp. R35]
ATGGATCTCGTGCCCGTGCTCGAAGAACCACTGAAGAAGGCGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGATCTGCTGCACCACTATCCGCGCAGATACGAGGAGCGCGGGCAGCTCACCCACCTCGCCG
ACCTCCCCATGGACGAGCATGTGACGGTGGTCGCCCAGGTCGCCGACGCGCGCCTGCACACCTTCGCCTCGTCCAGGGCA
CCCCGCGGCAAGGGCCAGCGCCTCGAAGTCACCATCACGGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGCAACGG
CGTGCACAAGCCCCACAAGGACCTCCTGCCCGGCACGCGCGCGATGTTCTCCGGCAAGGTCTCCGTCTTCAACCACCGCC
TCCAGCTGGCCCATCCGGCGTACGAGCTGCTGCGCGGCGACAGCGACGAAGCCGCCGAGAGCGTCGACTCCTGGGCGGGC
GCCCTCATCCCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGCCAAGTCCGTGCAGACGGTGCTGCCGAG
CGCCCAGGAAGCCGTCGACCCCCTCCCCGACTCCCTCCGGGACGGCCGCGGCCTGGTCGCCCTCCCCGAAGCCCTCCTCA
AGATCCACCGCCCGCACACCAAGGCCGACATCCACGACGCCCGCGCCCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAG
GTCGCCCTGGCCCGCCGCCGCCATGCCGACGCCCAACTCCCGGCCGTGGCCCGCACCCCCAAGCCGGACGGCCTGCTCAC
CGCCTTCGACGCCAAGCTGCCCTTCACCCTCACCGAGGGCCAGCAGAAGGTCTCCAAGGAGATCTTCGACGACCTCGCCA
CCGAGCATCCGATGCACCGCCTGCTCCAGGGAGAGGTCGGATCGGGCAAGACGATGGTGGCCCTGCGCGCCATGCTCGCC
GTCGTCGACGCGGGCGGGCAGGCCGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCGATCACGGA
GATGATGGGGGAGTTGGCCGAGGGCGGCATGCTCGGCGGGGCCGAGCACTCCACCAAGGTCGTGCTGCTCACCGGATCCA
TGGGCGCGGCGGCGCGGCGGCAGGCGCTGCTCGATCTGGTCACCGGTGAGTCCGGCATCGTCATCGGCACGCATGCGCTG
ATCGAGGACAAGGTGCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGCGA
CGCCCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTCCTGGTCATGACCGCCACGCCCATTCCGCGCACCGTCGCCATGA
CGGTCTTCGGCGACCTGGAGACCTCGGTCCTCGACCAGCTCCCCGCCGGACGTTCGCCCATCGCCAGCCATGTCGTCCCG
GCCGCCGACAAGCCGCACTTCCTCACGCGCGCGTGGGAGCGCGTACGCGAGGAAGTGGAGAACGGCCATCAGGCGTACGT
CGTCTGCCCCCGCATCGGAGACGAGGAGGACGACCCGAAGAAGACCAAGAAGAAGTCCCCCGAGGACGAGGCCGAGAAGC
GCCCTCCCCTCGCCGTCCTGGACGTCGCCGAACAGCTCGCCAAGGGCCCTCTCCAAGGCCTCAAGGTCGAGGTCCTGCAC
GGCCGTATGCAACCCGACGACAAGGACGCCGTGATGCGCCGCTTCGCCGCGGGCGAGACGGACGTGCTGGTCGCGACGAC
CGTGATCGAGGTCGGGGTGAACGTGCCGAACGCCACGGCGATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGC
TCCACCAGCTGCGCGGCCGCGTCGGCCGAGGCTCCGCCGCCGGACTCTGCCTCCTGGTCAGCGAGATGGCGGAGGCGAGC
CCGGCCCGCCAGCGGCTGACCGCGGTGGCGTCCACGCTCGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCG
CGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGTCCGCTCCTCGCTGCGCATGCTCGCCGTCATCGAGGACGAGGAGA
TCATCGCCGAGGCCCGTGAGGAGGCGGCGGCGGTGGTGGCCGCCGACCCGGACCTGGAGCGCCTGCCCGGCCTGCGGACG
GCGCTGGACGCGCTGCTGGACGAGGAGAGGGAGCAGTACTTGGAAAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(546-624)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(652-713)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

DEAD/DEAH box helicase (DEAD)

(298-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.109

94.708

0.361