Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8565_RS05955 Genome accession   NZ_AP028330
Coordinates   1141073..1141567 (+) Length   164 a.a.
NCBI ID   WP_002853583.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10089     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1136073..1146567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8565_RS05940 (B10089_11690) - 1137459..1138637 (-) 1179 WP_052801114.1 metal-dependent hydrolase -
  R8565_RS05945 (B10089_11700) gpsA 1138647..1139543 (-) 897 WP_209392619.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8565_RS05950 (B10089_11710) gatB 1139540..1140958 (-) 1419 WP_002872747.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8565_RS05955 (B10089_11720) luxS 1141073..1141567 (+) 495 WP_002853583.1 S-ribosylhomocysteine lyase Regulator
  R8565_RS05960 (B10089_11730) - 1141878..1142870 (+) 993 WP_002853499.1 isopenicillin N synthase family dioxygenase -
  R8565_RS05965 (B10089_11740) - 1142881..1143651 (+) 771 WP_032589959.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8565_RS05970 (B10089_11750) metE 1143663..1145927 (+) 2265 WP_052801116.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18319.27 Da        Isoelectric Point: 6.3290

>NTDB_id=92537 R8565_RS05955 WP_002853583.1 1141073..1141567(+) (luxS) [Campylobacter jejuni strain BCH-10089]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
FENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=92537 R8565_RS05955 WP_002853583.1 1141073..1141567(+) (luxS) [Campylobacter jejuni strain BCH-10089]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGCACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGTGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
TTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

70.807

98.171

0.695

Multiple sequence alignment