Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB5J50_RS21790 Genome accession   NZ_CP163440
Coordinates   4783445..4784443 (-) Length   332 a.a.
NCBI ID   WP_327429411.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4778445..4789443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS21770 (AB5J50_21770) - 4778729..4780261 (-) 1533 WP_369260091.1 MFS transporter -
  AB5J50_RS21775 (AB5J50_21775) - 4780324..4781379 (+) 1056 WP_369260092.1 helix-turn-helix transcriptional regulator -
  AB5J50_RS21780 (AB5J50_21780) - 4781357..4782124 (-) 768 WP_369260093.1 glucose 1-dehydrogenase -
  AB5J50_RS21785 (AB5J50_21785) - 4782121..4782765 (-) 645 WP_369260094.1 TetR family transcriptional regulator -
  AB5J50_RS21790 (AB5J50_21790) rpoS 4783445..4784443 (-) 999 WP_327429411.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB5J50_RS21795 (AB5J50_21795) - 4784621..4785205 (+) 585 WP_369260095.1 N-acetyltransferase family protein -
  AB5J50_RS21800 (AB5J50_21800) - 4785237..4786043 (-) 807 WP_369260096.1 dioxygenase -
  AB5J50_RS21805 (AB5J50_21805) - 4786184..4786687 (+) 504 WP_327429414.1 MarR family transcriptional regulator -
  AB5J50_RS21810 (AB5J50_21810) - 4786871..4788385 (-) 1515 WP_369260097.1 MFS transporter -
  AB5J50_RS21815 (AB5J50_21815) - 4788554..4789198 (-) 645 WP_369260098.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37092.85 Da        Isoelectric Point: 5.0475

>NTDB_id=925342 AB5J50_RS21790 WP_327429411.1 4783445..4784443(-) (rpoS) [Streptomyces sp. R35]
MATRAVARRKSATGETSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEAAAGAD
ASREELEALVAEGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMAVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=925342 AB5J50_RS21790 WP_327429411.1 4783445..4784443(-) (rpoS) [Streptomyces sp. R35]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCAGCGACGCGGCACGCAGTGTTCGCGTCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCACTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGGCGAGGCTGCGGCCGGGGCGGAC
GCGTCCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGCGAGCGGGCGAAGGACATCTTCATCCGCTCGAACCTCCGGCT
GGTCGTCGCTGTCGCCCGGCGCTATCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGG
TGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTGGTCGAGGAACTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTCGACTCGACACCGGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCCCCCGAACAGTCGGTCATGACCTTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTGGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGATGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTTCTCGAACTGAAG
AAGCTGGCCCGTGACACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364