Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J50_RS16955 Genome accession   NZ_CP163440
Coordinates   3687241..3689169 (+) Length   642 a.a.
NCBI ID   WP_369258934.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3682241..3694169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS16940 (AB5J50_16940) - 3683400..3683705 (+) 306 WP_327428523.1 YtxH domain-containing protein -
  AB5J50_RS16945 (AB5J50_16945) - 3683854..3685308 (+) 1455 WP_369258929.1 FGGY family carbohydrate kinase -
  AB5J50_RS16950 (AB5J50_16950) rcrP 3685508..3687241 (+) 1734 WP_369258931.1 ABC transporter ATP-binding protein Regulator
  AB5J50_RS16955 (AB5J50_16955) rcrQ 3687241..3689169 (+) 1929 WP_369258934.1 ABC transporter ATP-binding protein Regulator
  AB5J50_RS16960 (AB5J50_16960) - 3689347..3690720 (-) 1374 WP_369258936.1 RNA polymerase sigma factor -
  AB5J50_RS16965 (AB5J50_16965) dnaG 3690903..3692804 (-) 1902 WP_327428528.1 DNA primase -
  AB5J50_RS16970 (AB5J50_16970) - 3692851..3694116 (-) 1266 WP_369258938.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69502.04 Da        Isoelectric Point: 5.9084

>NTDB_id=925332 AB5J50_RS16955 WP_369258934.1 3687241..3689169(+) (rcrQ) [Streptomyces sp. R35]
MAGPMGRMMAGGGPDQHSMDFKGSGKRLLSQFKPERLTMYGMLCAVVLSVALSVIGPKILGKATDLVFAGIIGRQMPSGS
TKAEVLASMRERGEGGMADMLSGTDFTPGQGIDFAAVGNVLLLALCTFLLAGLLMAVATRLVNRAVNKTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLVMMFWVSPLLALVALVTVPLSFFVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRQDESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPAARPDELRGRVALQ
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIASMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTELLAANGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=925332 AB5J50_RS16955 WP_369258934.1 3687241..3689169(+) (rcrQ) [Streptomyces sp. R35]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCACTCGATGGATTTCAAGGGGTCCGGCAAACG
GCTCCTCTCCCAGTTCAAGCCCGAGCGCCTCACCATGTACGGCATGCTGTGCGCCGTCGTCCTGAGCGTGGCGCTCTCGG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCCGGAATCATCGGGCGGCAGATGCCGTCCGGCAGC
ACCAAGGCCGAGGTCCTCGCGTCCATGCGCGAGCGCGGCGAGGGCGGCATGGCCGACATGCTCTCGGGGACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGCCGCCGTCGGAAACGTACTGCTGCTCGCGCTCTGTACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACAAGACCGTGTACCGCATGCGCGAGGACCTCCAGGCGAAG
CTCTCCCGGCTGCCCCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATCGACAA
CATCCAGCAGACGCTGCAACAGTCGATGGGCCAGCTGGTCAACTCGCTGCTGACCATCGTGGGTGTGCTGGTGATGATGT
TCTGGGTCTCGCCGCTGCTCGCGCTGGTCGCGCTGGTCACCGTGCCTTTGTCCTTCTTCGTCGCCACACGCGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTGTTCGGGCGCCAGGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTGGTCGGCGGACTGCGTGTCGCGTCCGGCTCGCTGTCCATCGGTGACGTCCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAATCTGGTGCAGTCCGGTGTCGCGTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGGCCGACCCGGTGCCGGCGGCCCGTCCCGACGAGCTGCGCGGGCGGGTGGCCCTGCAG
AACGTGTCGTTCCGGTACGACCCCGAGAAGCCGCTGATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTGGC
GATCGTCGGCCCGACAGGTGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAAGTCACCGGGGGGCGCA
TCACCCTCGACGGTGTCGACATCGCGTCCATGTCCCGGGACGAACTCCGGGCCGGTATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGGACGATCGCCGAGAACATCGCGTACGGGGCCTCGCGGGACGTCACGCGGGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGATCGGTTCGTCCGGACGCTGCCGGAGGGCTACGACACCGTGATCGACGACGAGGGGACGG
GGGTCAGTGCGGGTGAGAAGCAGCTGATCACGATTGCCCGGGCGTTCCTGTCCGATCCGGTGATTCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACCCGTACGGAGGTTCTGATCCAGAAGGCGATGGCGAAGCTCGCGCATGGGCGGACCTCGTT
CGTGATCGCGCATCGGTTGTCGACGATTCGGGATGCCGACACGATTCTGGTGATGGAGAACGGGTCGATCGTGGAGCAGG
GCGCGCACACGGAGCTGCTGGCCGCCAACGGCGCGTACGCGCGCCTGTACCAGGCCCAGTTCGCCCAGGCGGTGGCTGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.777

96.262

0.393