Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AB5J50_RS12790 Genome accession   NZ_CP163440
Coordinates   2744168..2746255 (+) Length   695 a.a.
NCBI ID   WP_369257636.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2739168..2751255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS12765 (AB5J50_12765) - 2739214..2740221 (+) 1008 WP_369257629.1 heme A synthase -
  AB5J50_RS12770 (AB5J50_12770) - 2740262..2741026 (-) 765 WP_369257631.1 nucleotidyltransferase domain-containing protein -
  AB5J50_RS12775 (AB5J50_12775) - 2741070..2742176 (-) 1107 WP_369257632.1 amidohydrolase family protein -
  AB5J50_RS12780 (AB5J50_12780) - 2742407..2742763 (-) 357 WP_369257634.1 hypothetical protein -
  AB5J50_RS12785 (AB5J50_12785) - 2742859..2743812 (-) 954 WP_369265377.1 heme o synthase -
  AB5J50_RS12790 (AB5J50_12790) recP/tkt 2744168..2746255 (+) 2088 WP_369257636.1 transketolase Machinery gene
  AB5J50_RS12795 (AB5J50_12795) tal 2746291..2747409 (+) 1119 WP_327427842.1 transaldolase -
  AB5J50_RS12800 (AB5J50_12800) zwf 2747414..2748937 (+) 1524 WP_369257638.1 glucose-6-phosphate dehydrogenase -
  AB5J50_RS12805 (AB5J50_12805) opcA 2748934..2749995 (+) 1062 WP_369257640.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  AB5J50_RS12810 (AB5J50_12810) pgl 2749992..2750774 (+) 783 WP_369257642.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74811.61 Da        Isoelectric Point: 5.0155

>NTDB_id=925326 AB5J50_RS12790 WP_369257636.1 2744168..2746255(+) (recP/tkt) [Streptomyces sp. R35]
MSTKPTTTDLEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADADWVGRDRFVLSAGHSS
LTLYTQLYLAGFGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAQGESPF
DHFIFAIAGDGCLQEGISAEASSMAGHQELGNLILLWDDNHISIEGDTETAVSEDTVKRYEAYGWHVQRVAPKPDGDLDP
HAIYNAIEAAKKVTDKPSFIAMRSIIAWPAPNAQNTEAAHGSALGDDEVAATKRVLGFDPEKSFEVANEVLAHTREALDR
GREAKAEWEKGFAAWRTANPERAAEYDRIASTELPAGWEEKLPVFEAGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKTSSFLPADNPLPEADPYGRTIHFGIREHSMAAEMNGIALHGNTRVYGGTFLVFSDYMRNAVRLSALMHAPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREVLKRYTKVFGKGAPHGLALTRQGVPTYERNE
DAAKGGYVLFEAEGGSPEVILIGTGSEVHVAVEAREQLQAAGVPTRVVSMPCVEWFDEQDQAYRDSVLPPSVKARVSVEA
GIGLTWHRFVGDAGRIVSLEHFGASADGKVLFREFGFTAENVANAARESIAAAQR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=925326 AB5J50_RS12790 WP_369257636.1 2744168..2746255(+) (recP/tkt) [Streptomyces sp. R35]
GTGAGCACCAAGCCGACCACCACAGACCTCGAGTGGACCGAGTTGGACCAGCGGGCCGTCGACACCGCCCGCGTCCTGGC
CGCCGATGCCGTACAGAAGGTCGGCAACGGCCATCCCGGTACGGCGATGAGCCTGGCGCCTGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCGGCGGACGCCGACTGGGTCGGACGCGACCGCTTCGTACTGTCCGCGGGCCACTCGTCC
CTGACCCTCTACACCCAGCTCTACCTGGCCGGCTTCGGCCTGGAGCTGGACGATCTGAAGGCGTTCCGCACGTGGGGCTC
CAAGACTCCGGGTCACCCCGAGTACGGGCACACCACCGGTGTGGAGACGACGACCGGGCCGCTCGGCCAGGGTGTCGCCA
ACGCCGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGTCTGTTCGACCCGGAGGCCGCGCAGGGCGAGTCCCCGTTC
GACCACTTCATCTTCGCGATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCTGAGGCGTCCTCCATGGCAGGCCA
CCAGGAGCTCGGCAACCTGATCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACCGAGACCGCGGTCTCCG
AGGACACGGTCAAGCGGTACGAGGCGTACGGCTGGCATGTGCAGCGCGTGGCCCCGAAGCCGGACGGCGACCTGGACCCG
CACGCGATCTACAACGCGATCGAGGCCGCGAAGAAGGTGACGGACAAGCCGTCGTTCATCGCGATGCGCTCCATCATCGC
CTGGCCGGCGCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGACGAGGTCGCGGCAACTAAGC
GCGTCCTCGGCTTCGACCCGGAGAAGTCCTTCGAGGTCGCCAACGAGGTTCTCGCGCACACGCGTGAGGCGCTCGACCGC
GGTCGTGAGGCCAAGGCCGAGTGGGAGAAGGGCTTCGCCGCCTGGCGCACCGCCAACCCGGAGCGCGCCGCCGAGTACGA
CCGCATCGCCTCGACCGAACTGCCGGCCGGCTGGGAGGAGAAGCTCCCGGTCTTCGAGGCGGGCAAGGGTGTCGCGACGC
GTGCGGCGTCCGGCAAGGTGCTGCAAGCGCTCGGCGCGGTGATTCCCGAGCTGTGGGGCGGCTCCGCCGACCTGGCCGGC
TCGAACAACACCACGATCGACAAGACCAGCTCGTTCCTCCCTGCGGACAACCCGCTGCCGGAGGCGGACCCGTACGGTCG
CACGATCCACTTCGGTATCCGCGAGCACTCGATGGCCGCGGAGATGAACGGCATCGCGCTGCACGGCAACACCCGTGTCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTGCGCCTGTCGGCCCTCATGCACGCGCCGGTGACG
TACGTGTGGACGCACGACTCCATCGGTCTCGGCGAGGACGGCCCGACGCACCAGCCGGTCGAGCACCTGGCCTCGCTGCG
CGCCATCCCCGGTCTGAACGTCGTCCGTCCCGCGGACGCCAACGAGACCGCGATCGCCTGGCGCGAGGTCCTCAAGCGCT
ACACGAAGGTGTTCGGCAAGGGCGCCCCGCACGGTCTCGCGCTGACCCGTCAGGGCGTGCCGACGTACGAGCGCAACGAG
GATGCCGCCAAGGGCGGTTACGTGCTGTTCGAGGCCGAGGGCGGCTCGCCCGAGGTCATCCTGATCGGCACCGGCTCGGA
GGTGCACGTCGCCGTCGAGGCGCGCGAGCAGCTGCAGGCCGCGGGCGTCCCGACGCGGGTCGTGTCCATGCCGTGTGTGG
AGTGGTTCGACGAGCAGGACCAGGCGTACCGGGACAGTGTCCTGCCGCCGTCCGTGAAGGCGCGGGTCTCGGTCGAGGCC
GGTATCGGTCTGACCTGGCACCGGTTCGTCGGGGACGCCGGACGCATTGTTTCGCTGGAGCACTTCGGTGCTTCGGCCGA
CGGCAAGGTGCTCTTCCGCGAATTCGGCTTCACTGCCGAGAACGTCGCCAATGCCGCCCGGGAATCGATCGCCGCAGCCC
AGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.022

96.835

0.436