Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5J49_RS42840 Genome accession   NZ_CP163439
Coordinates   9766184..9768517 (-) Length   777 a.a.
NCBI ID   WP_369174283.1    Uniprot ID   -
Organism   Streptomyces sp. R28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9761184..9773517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J49_RS42820 (AB5J49_42820) - 9761402..9763354 (+) 1953 WP_369174279.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  AB5J49_RS42825 (AB5J49_42825) - 9763351..9764097 (+) 747 WP_369174280.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  AB5J49_RS42830 (AB5J49_42830) - 9764401..9765171 (+) 771 WP_369174281.1 GNAT family N-acetyltransferase -
  AB5J49_RS42835 (AB5J49_42835) - 9765186..9766208 (+) 1023 WP_369174282.1 lysophospholipid acyltransferase family protein -
  AB5J49_RS42840 (AB5J49_42840) uvrA 9766184..9768517 (-) 2334 WP_369174283.1 ABC transporter Machinery gene
  AB5J49_RS42845 (AB5J49_42845) - 9768686..9770002 (+) 1317 WP_369174284.1 phytase -
  AB5J49_RS42850 (AB5J49_42850) - 9770028..9771026 (-) 999 WP_369174285.1 LLM class flavin-dependent oxidoreductase -
  AB5J49_RS42855 (AB5J49_42855) - 9771061..9772446 (-) 1386 WP_369174286.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 82803.93 Da        Isoelectric Point: 6.9637

>NTDB_id=925305 AB5J49_RS42840 WP_369174283.1 9766184..9768517(-) (uvrA) [Streptomyces sp. R28]
MHSPHDPYVRVRGAREHNLKGVDVDIPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPKVGE
ITGLPPAVSLQQRRSAPTSRSSVGTVTNLSNSLRMLFSRAGDYPPGAERLDSDAFSPNTAAGACPQCHGLGQVHRTAEEL
LVPDPSLSIREGAIAAWPGAWQGKNLRDILDALGHDVDRPWRELPPENRRWILFTDEQPVVTVHPVRDADRIQRPYQGTY
MSAHRYVMKTFSDSKSPTLRAKAERFLASAPCPACGGSRLRPEALAVTFAGRTIAELAALPLTELADILDGGTSETARVL
TEDLKSRIGPVVELGLGYLGLDRATPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLARLKAAGN
TVFVVEHHLDVVRGADWLVDVGPRAGEHGGQVLHSGPVAELAAVPESATARFLFDDSPIDVRQVRAPSGQLKVGPVTRHN
LRGVSAEFPLGVFTAVTGVSGSGKSTLIGEITEDLAGVGRLVSVDQKPIGRTPRSNLATYTGLFDVVRKVFAGTDEARAR
GYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYHPETLQVAYRGRNIAQVLDLTVEAAADFFADTP
AVARSLGTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRGRRGHTLYLLDEPTTGLHPADVEVLMRQLHGLVDAGHT
VVVVEHDMSVVAGADWVIDLGPGGGDAGGRIVVAGPPAQVARERGSATAPYLARVMP

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=925305 AB5J49_RS42840 WP_369174283.1 9766184..9768517(-) (uvrA) [Streptomyces sp. R28]
ATGCACTCCCCGCACGACCCGTACGTCCGTGTCCGCGGCGCCCGTGAGCACAACCTCAAGGGCGTGGACGTCGACATTCC
GCGGGACGTGCTGGCCGTGTTCACGGGCGTGTCCGGGTCAGGGAAGTCCTCGCTCGCGTTCGGCACGATCTACGCGGAGG
CCCAGCGCCGCTACTTCGAGTCGGTCGCGCCGTACGCACGCAGGCTGATCCACCAGGTCGGCGCGCCGAAGGTCGGCGAG
ATCACCGGTCTTCCGCCCGCCGTGTCGCTGCAGCAGCGGCGCTCCGCGCCGACGTCCCGCTCGTCCGTCGGCACGGTCAC
CAACCTCTCCAACTCCCTGCGGATGCTGTTCTCCCGCGCCGGCGACTACCCGCCCGGCGCCGAGCGGCTCGACTCGGACG
CGTTCTCGCCCAACACGGCGGCCGGGGCGTGCCCGCAGTGCCACGGGCTCGGCCAAGTGCACCGTACGGCCGAGGAGTTG
CTGGTCCCCGACCCGTCGCTGTCGATCCGGGAGGGCGCGATCGCCGCGTGGCCGGGTGCCTGGCAGGGCAAGAACCTGCG
CGACATCCTCGACGCGCTCGGCCACGACGTCGACCGGCCCTGGCGCGAGCTGCCGCCCGAGAACCGGCGGTGGATCCTGT
TCACCGACGAGCAGCCGGTCGTCACCGTCCACCCGGTGCGCGACGCCGACCGTATCCAACGGCCGTACCAGGGCACGTAC
ATGAGCGCCCACCGGTACGTCATGAAGACCTTCTCCGACTCCAAGAGCCCGACGCTCAGGGCGAAGGCGGAGCGGTTCCT
CGCCTCCGCGCCCTGCCCGGCGTGCGGCGGCAGCAGACTGCGGCCCGAGGCACTGGCGGTCACGTTCGCCGGCCGGACGA
TCGCCGAGCTGGCCGCGCTGCCGCTCACGGAGCTGGCGGACATCCTGGACGGCGGCACTTCGGAGACGGCTCGTGTCCTC
ACCGAGGACCTCAAGTCCCGTATCGGGCCCGTCGTCGAGCTCGGCCTCGGCTACCTCGGCCTCGACCGTGCCACCCCCAC
GCTCTCGGCGGGCGAGCTGCAGCGCCTGCGGCTCGCGACCCAGCTCCGGTCCGGTCTCTTCGGTGTCGTGTACGTCCTCG
ACGAGCCGTCCGCGGGACTGCACCCGGCGGACACGGAGGCGCTGCTGACGGTGCTGGCGCGGCTGAAGGCGGCCGGGAAC
ACGGTGTTCGTCGTCGAGCACCACCTGGACGTCGTGCGCGGCGCCGACTGGCTGGTCGACGTGGGGCCGCGGGCCGGCGA
GCACGGCGGGCAGGTGCTGCACAGCGGGCCGGTGGCCGAGCTGGCGGCGGTCCCGGAGTCGGCGACGGCGCGCTTCCTGT
TCGACGACTCCCCCATCGACGTACGCCAAGTGCGCGCCCCGAGCGGTCAGTTGAAGGTCGGCCCGGTCACCCGGCACAAC
CTGCGCGGGGTGTCCGCCGAGTTCCCGCTCGGGGTGTTCACGGCCGTCACCGGTGTCTCGGGGTCGGGCAAGTCCACGCT
CATCGGCGAGATCACCGAGGACCTGGCGGGTGTGGGGCGTCTGGTCTCGGTCGACCAGAAGCCGATCGGCCGGACCCCGC
GCTCCAATCTCGCCACCTACACCGGCCTCTTCGACGTCGTGCGCAAGGTGTTCGCGGGCACCGACGAGGCGCGGGCGCGT
GGTTACGGCGTCGGGCGCTTCTCGTTCAATGTCGCGGGAGGGCGCTGCGAGACCTGCCAGGGCGAGGGCTTCGTCAGCGT
CGAGCTGCTGTTCCTGCCGAGCACGTACGCGCCGTGCCCGGACTGCGGCGGGGCGCGCTACCACCCCGAGACGCTCCAAG
TGGCCTACCGGGGACGCAACATCGCGCAGGTGCTGGACCTCACCGTCGAGGCGGCCGCGGACTTCTTCGCGGACACGCCG
GCCGTGGCCCGCAGCCTGGGCACCCTCCTCGACGTCGGTCTCGGCTACCTGCGGCTCGGCCAGCCCGCCACCGAGCTGTC
CGGCGGTGAGGCCCAGCGCATCAAGCTGGCGAGCGAGCTCCAGCGTGGCCGTCGCGGCCACACGCTCTACCTCCTCGACG
AGCCGACGACCGGACTCCACCCGGCCGACGTCGAGGTGCTCATGCGCCAGCTGCACGGGCTCGTCGACGCCGGCCACACC
GTGGTCGTGGTCGAGCACGACATGTCCGTCGTCGCGGGCGCGGACTGGGTGATCGACCTGGGGCCGGGCGGTGGTGACGC
GGGCGGACGGATCGTGGTGGCGGGTCCGCCCGCTCAGGTGGCACGGGAGAGAGGCAGCGCGACGGCACCCTATCTCGCCC
GGGTCATGCCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(481-696)

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.215

87.259

0.377
  uvrA Streptococcus pneumoniae TIGR4

43.215

87.259

0.377
  uvrA Streptococcus pneumoniae D39

43.215

87.259

0.377