Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VKP40_RS02165 Genome accession   NZ_CP142355
Coordinates   418641..419366 (+) Length   241 a.a.
NCBI ID   WP_002983379.1    Uniprot ID   A0A4U7HHL6
Organism   Streptococcus pyogenes strain A946     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 413641..424366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP40_RS02135 (VKP40_02135) - 413820..415280 (+) 1461 WP_002983366.1 NCS2 family permease -
  VKP40_RS02140 (VKP40_02140) tsaE 415434..415895 (+) 462 WP_111686335.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  VKP40_RS02145 (VKP40_02145) - 415870..416394 (+) 525 WP_002994338.1 GNAT family N-acetyltransferase -
  VKP40_RS02150 (VKP40_02150) brpA 416403..417686 (+) 1284 WP_002994335.1 biofilm formation/cell division transcriptional regulator BrpA -
  VKP40_RS02155 (VKP40_02155) - 417797..418153 (-) 357 WP_002988657.1 hypothetical protein -
  VKP40_RS02160 (VKP40_02160) - 418150..418569 (-) 420 WP_002983376.1 HIT family protein -
  VKP40_RS02165 (VKP40_02165) pptA 418641..419366 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  VKP40_RS02170 (VKP40_02170) - 419369..420403 (+) 1035 WP_002988663.1 ABC transporter permease -
  VKP40_RS02175 (VKP40_02175) ccrZ 420467..421258 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  VKP40_RS02180 (VKP40_02180) trmB 421258..421893 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VKP40_RS02190 (VKP40_02190) rimP 422152..422688 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  VKP40_RS02195 (VKP40_02195) nusA 422863..424020 (+) 1158 WP_002994325.1 transcription termination factor NusA -
  VKP40_RS02200 (VKP40_02200) rnpM 424036..424332 (+) 297 WP_002983486.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26678.75 Da        Isoelectric Point: 4.5624

>NTDB_id=925265 VKP40_RS02165 WP_002983379.1 418641..419366(+) (pptA) [Streptococcus pyogenes strain A946]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=925265 VKP40_RS02165 WP_002983379.1 418641..419366(+) (pptA) [Streptococcus pyogenes strain A946]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U7HHL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722
  pptA Streptococcus thermophilus LMD-9

71.967

99.17

0.714